DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ptpmeg and Frmd7

DIOPT Version :9

Sequence 1:NP_001163309.2 Gene:Ptpmeg / 38059 FlyBaseID:FBgn0261985 Length:974 Species:Drosophila melanogaster
Sequence 2:NP_001177261.1 Gene:Frmd7 / 385354 MGIID:2686379 Length:703 Species:Mus musculus


Alignment Length:711 Identity:207/711 - (29%)
Similarity:310/711 - (43%) Gaps:139/711 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 VLFLDDITHTFRIEKRAKGSELLDQVFQYLELSERDYFGLLFPQKPGDVVRWVDAQKQFKKQCSS 102
            |.||||....|.:::::.|..|.:....:|.|:|::||||.|....|:.| |::..|...||   
Mouse     6 VQFLDDSQKIFVVDQKSSGKALFNLSCGHLNLAEKEYFGLEFCSHSGNNV-WLELLKPITKQ--- 66

  Fly   103 VSLDNDAVPLLEFRVKFFVSDPSRLQEEFTRYQFYLQIKRNILLGKLPCSSNTQCLLASYTVQSE 167
              :.|....:.:|.||||..||..|:||.|||.|.||||:::.||:||||.|...|:.|:.:|||
Mouse    67 --VKNPKEVVFKFMVKFFPVDPGHLREELTRYLFTLQIKKDLALGRLPCSDNCTALMVSHILQSE 129

  Fly   168 LGDFNALEHQPGYLSGMQLLCDQTTEAERKVGELHKLHRGQLPADAEYNYLEHAKRLELYGIDLH 232
            ||||:. |....:|...|.|..|.: .|.|:.:.|:.|.|:.||:::...|:.|::|::|||...
Mouse   130 LGDFHE-ETVRKHLVQTQYLPSQAS-LESKIMQFHQQHIGRSPAESDILLLDIARKLDMYGIRPQ 192

  Fly   233 RATDSNGKELQLGVSAVGLLVFQHSLRVNTFSWSKMVKVSFKRKDFFIQLRREPSENYDTLLGFG 297
            .|:|..|.::.|.|:.:|:||.:.:.::|||:|:|:.|:|||||.|.|:|...........|.|.
Mouse   193 PASDGEGMQIHLAVAHMGVLVLRGNTKINTFNWAKIRKLSFKRKHFLIKLHANILVLCKDTLEFT 257

  Fly   298 MSSHKHAKALWKSCVEHHSFFRL-KRPHRLSRFLNISLGSKFYYSGRTELQAVQESKQRGRI--- 358
            |:|....||.||:|||:|:|||| :.|....:.|..|.||.|.|||||:.|.::..| :||:   
Mouse   258 MASRDACKAFWKTCVEYHAFFRLSEEPKSKPKTLLCSKGSSFRYSGRTQRQLLEYGK-KGRLKSL 321

  Fly   359 -----------HKVFVRSPSKRLLGAAGGVG----TSGSSGGTPMQQHSGSES------------ 396
                       |:...||....|...:..|.    |.|||....:.....|||            
Mouse   322 PFERKQYPSQYHERQCRSSPDILSDVSKQVEDLRLTYGSSYYRNVNGVHASESMLDSRRRNSAVE 386

  Fly   397 ---ANSHNNGKPAGAGTILTITKTSR--------PHDN------------------KVTSKEADS 432
               |....:.||....|.|..:::|.        |..|                  :.|||.|||
Mouse   387 VTFAAELEHSKPEAEATSLHPSQSSSSFTFIYADPVFNTDPEPIEFFEERSPLSSFQTTSKFADS 451

  Fly   433 MPRKAWEQQSDEYDIQLDVGFIEQCTRRFESASPSPMPPAYSSGQHSPILLP-TTIADAVGHQQP 496
            ...||...:...|   .||.:| .||    |.....|||........|..:| .::..|..:.:|
Mouse   452 HTSKASPARQLTY---TDVPYI-PCT----SQKVDIMPPQVFFYVDKPPQVPRRSLIMAEENMRP 508

  Fly   497 ESGSDLITIR-------------LQADEQ----------GRYGFNVK-----GGVDLSLPVQVSK 533
            :|..|...|:             ||.|.|          ||...||:     ..:|.:....:.:
Mouse   509 DSYVDHSAIKPAKRSPRNMRIKSLQQDLQELQEAMARTSGRSNINVEPEEEDPHLDDAFAYNLQE 573

  Fly   534 VVP---HTPADRCTPRVCEGDEVLMINGRDVHGLRHEQVVAMIRDCRHQASGELLLTVRPQRSAP 595
            ..|   .:.:|..|.|...|.|...:.          ...|:.|     .:.....|...|....
Mouse   574 QTPKRSQSQSDMKTIRFPFGSEFRPLG----------PCPALTR-----KTDLFACTFAEQEFPT 623

  Fly   596 LLLEEEPLYQYVPESDEIGSHSNLLDGDALFTQSLLLLSDG---------LASGALLAQYE 647
            :|:::....:|| .|:...|.|.::..|..|     |...|         |:||:|..:.|
Mouse   624 VLIDQSSAERYV-ASESSDSESEIIKPDYYF-----LYGKGTKSPRARIRLSSGSLQLEEE 678

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PtpmegNP_001163309.2 B41 35..232 CDD:214604 75/193 (39%)
FERM_N 38..102 CDD:286467 22/63 (35%)
FERM_M 125..232 CDD:278785 45/106 (42%)
FERM_C_PTPN4_PTPN3_like 226..320 CDD:270010 39/93 (42%)
FA 333..369 CDD:285894 16/49 (33%)
PDZ_signaling 502..589 CDD:238492 19/117 (16%)
Y_phosphatase 666..955 CDD:278528
PTPc 668..955 CDD:238006
Frmd7NP_001177261.1 FERM_F1_FRMD7 1..86 CDD:340708 28/85 (33%)
FERM_M 85..191 CDD:366056 47/107 (44%)
FERM_C_FARP1-like 179..299 CDD:270014 48/119 (40%)
FA 294..330 CDD:370090 13/36 (36%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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