DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ptpmeg and IA-2

DIOPT Version :9

Sequence 1:NP_001163309.2 Gene:Ptpmeg / 38059 FlyBaseID:FBgn0261985 Length:974 Species:Drosophila melanogaster
Sequence 2:NP_608562.4 Gene:IA-2 / 33277 FlyBaseID:FBgn0031294 Length:1319 Species:Drosophila melanogaster


Alignment Length:1079 Identity:219/1079 - (20%)
Similarity:353/1079 - (32%) Gaps:356/1079 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 FLDDITHTFRIE-------------KRAKGSELLDQVFQYLELSERDYFGLLFPQ----KPGDVV 87
            |||  |...|||             :||:.:.|  :::|.|..||.|      ||    ||....
  Fly   369 FLD--TERQRIEREQQLAAAEQDADRRAEQNRL--ELYQILAASEPD------PQPYQRKPAAQP 423

  Fly    88 RWVD---------AQKQFKKQ-----------------CSSVSLDNDAVPLLEFRVKFFVSDPSR 126
            ..:|         .|::.|:|                 .|.:...::..|....|.:........
  Fly   424 NAMDQLEAIVEQQQQRELKEQQEQAKAPVYVPPEEVNESSELYFPDNFAPFKRARGRSRGGLAEE 488

  Fly   127 LQEEFTRYQFYLQIKRNILLGKLPCSSNTQCLLASYTVQSELGDFNALEHQPGYLSGMQLLCDQT 191
            :::|..:..|:.::                           .|:...::..|.....::...|.|
  Fly   489 VEDEQPKRSFFREL---------------------------AGEQGLVQEPPLRFRHVETEVDAT 526

  Fly   192 TEAERKVGELHKLHRGQLPADAEYNYLEHAKRLELYGIDLHRATDSNGKELQLGVSAVGLLVFQH 256
            .|..::           .||.        .|:|:.|.:.|.:..                :.|:.
  Fly   527 PELVKR-----------RPAS--------FKQLDPYDVSLQQQE----------------MAFES 556

  Fly   257 SLRVNTFS----WSKMVKVSFKRKDFFIQLRRE------PSENYDT------------------L 293
            .|..|:.:    .:.:...||.|:....::..|      |.:..||                  :
  Fly   557 GLLRNSLTPLEEEAMLASNSFPRQAKSQRVYTEGGLLLMPQDEQDTDGMQADEPENVKQSLLANM 621

  Fly   294 LGFGMSSHKHAKALWKSCVEHHSFFRLKRPHRLSRFLNISLGSKFYYSGR--TELQAVQESKQRG 356
            |||.                .|....:|:|..|       ||.....|..  .:|:..:..||:|
  Fly   622 LGFA----------------RHERLDVKKPGPL-------LGPPSLGSAELSNQLETEKAHKQKG 663

  Fly   357 RIHKVFVRSPSKRLLGAAGGVGTSGSSGGTPMQQHSGSESA-----------------NSHNNGK 404
            ..:|..:.:..|     ......:........||||..:.|                 :|.|:|:
  Fly   664 HGNKEVLPAHIK-----GNDEDDAHKKKKVMKQQHSAEDHAPHTVDTEYVHVFVKNPIDSWNDGQ 723

  Fly   405 -----------PAGAGTILTITK---TSRPHDNKVTSKEADSMPRKAWEQQSDEYDIQLDVGFI- 454
                       ..|..:.||:.:   :.|.:.|....|.|..:.|...|.:..:.:||..|||. 
  Fly   724 RIMKELEQILHMQGYFSYLTVQQHEVSFRVNSNNPERKTAGDVARTINENRGVKNNIQRRVGFYV 788

  Fly   455 ---------------EQCTRRFESASPSPMPP---AY---SSGQHSPILLPTTIADAVGHQQPES 498
                           ...:.|.|.|...|...   ||   .:|..:.|::..|:.....|.:   
  Fly   789 LHAGVGDVIKDLQDPSVSSSRIELAEQGPDVTHIMAYMFAGAGAAAVIVIFVTLILIKRHDR--- 850

  Fly   499 GSDLITIRLQADEQGRYGFNVKGGVDLSLPVQVSKVVPHTPADRCTPRVC--EGDEVLMINGRDV 561
                     :.|:.|.....:.|....|...|          :.|..|:.  .|.......|...
  Fly   851 ---------KRDKLGGLQSGIAGAETCSKDYQ----------ELCRARMAGKAGGGGNSTGGAAG 896

  Fly   562 HGLRHEQVVAMIRDCRHQASGELLLTVRP--QRSAPLLLEEEPLYQYVPESDEIGSHSNLLDGDA 624
            .|.........|.....:..|      ||  .||:.....|||..          ::.::..|..
  Fly   897 GGSNEPAPSGRITSLSKENEG------RPPSSRSSTSSWSEEPAL----------TNMDISTGHM 945

  Fly   625 LFTQSLLLLSDGLAS-GALLAQYELMYRKNPDLAITE-ARKPANAPKNRYRDISPYDCTRV---S 684
            :    |..:.|.|.: |.|..::|.:.|...:.:..| |.:|..|..||.....|||.:||   .
  Fly   946 V----LSYMEDHLRNKGRLQREWEALCRYEAEPSAREAASQPQCAGLNRPGAPLPYDHSRVVLNH 1006

  Fly   685 LVNSLTGDYINANYVNMEIPGGAVNRYIATQGPLASTTTDFWRMVQQESSHLLVMLTTVMESGRQ 749
            |.|:...||:||:.:....|....  |:|.||||.||...||:|:.::.:.::|.|..:.|:|..
  Fly  1007 LANAEGLDYVNASTITDHDPRAPA--YVAAQGPLPSTLAHFWQMIWEQGAVVIVALCRLQENGEV 1069

  Fly   750 KCHQYWPVTGEELQLAEGFSVRCLSEK--PDETGSFVFREFVLKD--KHEQRHIHHMQYLAWPDH 810
            .|.:|||..|.|:.  ..:.|..:||.  .|:   ::.|.|.||:  ..|.|.:....:|:||..
  Fly  1070 ACARYWPEEGAEVY--HIYEVHLVSEHIWCDD---YLVRSFYLKNLRTSETRTVTQFHFLSWPHM 1129

  Fly   811 CVPSDPNLFLEFTERV-RAARNRTLLQEIEESLKQVRLMDADADADENGGLMRERKCAASNGATP 874
            .||:.....|:|..:| ::.|.|                               |.|        
  Fly  1130 GVPAQAKALLDFRRKVNKSYRGR-------------------------------RSC-------- 1155

  Fly   875 EDETPVSTSVHQCISAANPPVIVHCSAGIGRTGVLILMDTALALME--AREPVYPLDIVRT---M 934
                               |::||.|||.|||||.||:|..|..|.  |||    :||..|   :
  Fly  1156 -------------------PIVVHGSAGAGRTGVYILLDLVLERMNKGARE----IDIAATLEHL 1197

  Fly   935 RDQRACMVQNVSQYRFVCECICAAYMKISRSSAAINDDE 973
            |||||.:|....|:.||...:......|.::..|....|
  Fly  1198 RDQRAGVVATRQQFEFVLMAVAEEVHAILKALPANTSGE 1236

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PtpmegNP_001163309.2 B41 35..232 CDD:214604 38/234 (16%)
FERM_N 38..102 CDD:286467 23/104 (22%)
FERM_M 125..232 CDD:278785 12/106 (11%)
FERM_C_PTPN4_PTPN3_like 226..320 CDD:270010 16/121 (13%)
FA 333..369 CDD:285894 8/37 (22%)
PDZ_signaling 502..589 CDD:238492 12/88 (14%)
Y_phosphatase 666..955 CDD:278528 89/301 (30%)
PTPc 668..955 CDD:238006 88/299 (29%)
IA-2NP_608562.4 Receptor_IA-2 708..795 CDD:288410 17/86 (20%)
PTPc 960..1220 CDD:214550 95/328 (29%)
PTPc 995..1220 CDD:238006 86/293 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45443531
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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