DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ptpmeg and gopc

DIOPT Version :9

Sequence 1:NP_001163309.2 Gene:Ptpmeg / 38059 FlyBaseID:FBgn0261985 Length:974 Species:Drosophila melanogaster
Sequence 2:NP_956851.1 Gene:gopc / 326887 ZFINID:ZDB-GENE-030131-5086 Length:455 Species:Danio rerio


Alignment Length:466 Identity:85/466 - (18%)
Similarity:156/466 - (33%) Gaps:152/466 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   237 SNGKELQLGVSAV---GLLVFQHSLRVNTFSWSKMVKVSFKRKDFFIQLRREPSENYDTLLG--- 295
            |.|..|..|.:|.   |:.:|:         |.::::..|.:.  |:.:        |.|||   
Zfish    10 SPGSGLSAGPAAATGSGMSMFR---------WLEVLEKEFDKA--FVDV--------DLLLGEID 55

  Fly   296 --------------FGMSSHKHAKALWKSCVEHHSFFRLKRPHRLSRFLNISLGSKFYYSGRTEL 346
                          ..:||     ...:.|.:..:.|:|.  |:|...| :.|        |:||
Zfish    56 PDQADITYEGRQKMTSLSS-----CFAQLCHKAQTIFQLN--HKLEAQL-VDL--------RSEL 104

  Fly   347 QAVQESK--QRGRIHKVFVRSPSKRL-LGAAGGVGTSGSSGGTPMQQHSGSESANSHNNGKPAGA 408
            ..||..|  ....:|:..::..:.:| |.|.||......|....|...|..|..      |...|
Zfish   105 TDVQAEKVVVEKEVHEQLLQLHAMQLKLQAKGGQAVDSDSIKDRMPVPSVEEKE------KELEA 163

  Fly   409 GTILTITKTSRPHDNKVTSKEADSMPR-------------------------------------- 435
            .....:.:.....:.|:..||.:::.|                                      
Zfish   164 SKKEKVKEVKLEAEVKMLKKENEALRRHIAVLQAEVYGARLAAKYLDKELAGRVQQIQLLGRDMK 228

  Fly   436 -----KAWEQQSDEYDIQLDVGFIEQCTRRFESASPSPMPPAYSSGQHSPILLPTTIADAVGH-- 493
                 |.|.|...|..:......|..|..|.:...|.|.|                    |||  
Zfish   229 GPAHDKLWNQLEAEIHLHRHKTVIRACRGRNDPKKPLPSP--------------------VGHDT 273

  Fly   494 ---QQPESGSDLITIRLQADEQGRYGFNVKGGVDLSLPVQVSKVVPHTPADRCTPRVCEGDEVLM 555
               ::.:....:..:.|..::....|.::.||.:..:|:.:|::.|..||:|| ..:..||.:|.
Zfish   274 DSLKKTQGVGPIRKVVLTKEDHEGLGISITGGKEHGVPILISEIHPTQPAERC-GGLHVGDAILA 337

  Fly   556 INGRDVHGLRHEQVVAMIRDCRHQASGELLLTVRPQRSAPLLLEEEPLYQYVPES--------DE 612
            :|..::...:|::.|.::...|.:...|::..      ||.:..::...:|..:|        ||
Zfish   338 VNNINLRDAKHKEAVTILSQQRGEIEFEVVYV------APEVDSDDENVEYEDDSGHRYRLYLDE 396

  Fly   613 I-----GSHSN 618
            :     .:|:|
Zfish   397 LEEASAANHNN 407

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PtpmegNP_001163309.2 B41 35..232 CDD:214604
FERM_N 38..102 CDD:286467
FERM_M 125..232 CDD:278785
FERM_C_PTPN4_PTPN3_like 226..320 CDD:270010 18/102 (18%)
FA 333..369 CDD:285894 8/37 (22%)
PDZ_signaling 502..589 CDD:238492 19/86 (22%)
Y_phosphatase 666..955 CDD:278528
PTPc 668..955 CDD:238006
gopcNP_956851.1 PDZ_signaling 285..367 CDD:238492 19/82 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.