DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ptpmeg and Frmd3

DIOPT Version :9

Sequence 1:NP_001163309.2 Gene:Ptpmeg / 38059 FlyBaseID:FBgn0261985 Length:974 Species:Drosophila melanogaster
Sequence 2:NP_766457.1 Gene:Frmd3 / 242506 MGIID:2442466 Length:595 Species:Mus musculus


Alignment Length:661 Identity:167/661 - (25%)
Similarity:273/661 - (41%) Gaps:153/661 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 KKTPQRQQCVTVLFLDDITHTFRIEKRAKGSELLDQVFQYLELSERDYFGLLF--PQKPGDVVRW 89
            |...|..:| |:..|||...:..|::..||..|::.:..|..|.|:||||:.:  |:|..   .|
Mouse    26 KSLNQEMKC-TIRLLDDSEVSCHIQRETKGQFLIEYICNYYSLLEKDYFGIRYVDPEKQR---HW 86

  Fly    90 VDAQKQFKKQCSSVSLDNDAVPLLEFRVKFFVSDPSRLQEEFTRYQFYLQIKRNILLGKLPCSSN 154
            ::..|...||..|     .....:.|||||:..:|.:::||.|||..||||||:|..|:|.||.:
Mouse    87 LEPNKSIFKQMKS-----HPPYTMCFRVKFYPHEPLKIKEELTRYLLYLQIKRDIFHGRLLCSFS 146

  Fly   155 TQCLLASYTVQSELGDFNALEHQPGYLSGMQLLCDQTTEAERKVGELHKLH-RGQLPADAEYNYL 218
            ....|.:..||:|.||:...||...|:|..::...|:.:.|||:.|:|... |||.||.||:|.|
Mouse   147 DAAYLGACIVQAEFGDYYPDEHPENYISEFEIFPKQSQKLERKIMEIHNNELRGQSPAIAEFNLL 211

  Fly   219 EHAKRLELYGIDLHRATDSNGKELQLGVSAVGLLVFQHSLRVNTFSWSKMVKVSFKRKDFFIQLR 283
            ..|..||.||:|.|...||.|....||.:|.|.:|||.:.|::...||.:.|:.|:.|.|:: :.
Mouse   212 LKAHTLETYGVDPHPCKDSRGATAFLGFTAAGFVVFQGNKRIHLRKWSDVCKLKFEGKTFYV-IG 275

  Fly   284 REPSENYDTLLGFGMSSHKHAKALWKSCVEHHSFFRLKRPHRLSRFLNISL---GSKFYYSGRTE 345
            .:..:|  .:|.|..|:....|.|||..||:.:|::..:..::....:..:   ||:|.|||:..
Mouse   276 SQKEKN--AVLAFHTSTPAACKHLWKCGVENQAFYKYAKSSQIKTVSSSKIFFKGSRFRYSGKVA 338

  Fly   346 LQAVQESKQRGR----IHKVFVRSPSKRLLGAAGGVGTSGSSGGTPMQQHSGSESANSHNNGKPA 406
            .:.|:.|.:..|    :|:|.:                            :.|.|.:|.|.....
Mouse   339 KEVVEASSKIQRDPPEVHRVNI----------------------------TQSRSFHSLNKQLII 375

  Fly   407 GAGTILTITKTSRPHDNKVTSKEADSMPRKAWEQQSDEYDIQLDVGFIEQCTRRFESASPSPMPP 471
            ....:..:..:....:.:|...|...:|:             :||.                   
Mouse   376 NMEPLQPLLPSPTEQEEEVPVGEGVPLPK-------------MDVS------------------- 408

  Fly   472 AYSSGQHSPILLPTTIADAVGHQQPESGSDLITIRLQADEQGRYGFNVKGGVDLSLPVQVSKVVP 536
                   .|::..:.:..|.....|:...|    |::.|                 |:.:|::. 
Mouse   409 -------EPLIASSPVKGAQCADPPDEEED----RVKED-----------------PLTISELA- 444

  Fly   537 HTPADRCTPRVCEGDEVLMINGRDVHGLRHEQVVAMIRDCRHQASGELLLT-----VRPQRSAPL 596
            :.|:....|...:.||                 :.|:.||..:...|...|     :....:|.|
Mouse   445 YNPSASLLPTPVDDDE-----------------INMLFDCPSRLELEREDTDSFEELEADENAFL 492

  Fly   597 LLEEEPLYQ--------------YVPESDEIGSHSNLLD---GDALFTQSLLLLSDGLASGALLA 644
            :.|||.|.:              ::..:..:.|.|.||.   |..||...||||.  |.||..|:
Mouse   493 IAEEEELKEARQALSWSYSILTGHIWVNPLVKSFSRLLVVGLGLLLFVFPLLLLL--LESGIDLS 555

  Fly   645 QYELMYRKNPD 655
             :....|:.|:
Mouse   556 -FLCEIRQTPE 565

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PtpmegNP_001163309.2 B41 35..232 CDD:214604 76/199 (38%)
FERM_N 38..102 CDD:286467 20/65 (31%)
FERM_M 125..232 CDD:278785 47/107 (44%)
FERM_C_PTPN4_PTPN3_like 226..320 CDD:270010 32/93 (34%)
FA 333..369 CDD:285894 11/42 (26%)
PDZ_signaling 502..589 CDD:238492 13/91 (14%)
Y_phosphatase 666..955 CDD:278528
PTPc 668..955 CDD:238006
Frmd3NP_766457.1 B41 33..225 CDD:214604 76/200 (38%)
FERM_N 36..99 CDD:286467 20/65 (31%)
FERM_M 117..225 CDD:278785 47/107 (44%)
PH-like 206..309 CDD:302622 39/105 (37%)
FA 323..>357 CDD:285894 9/33 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

Return to query results.
Submit another query.