DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ptpmeg and C46A5.1

DIOPT Version :9

Sequence 1:NP_001163309.2 Gene:Ptpmeg / 38059 FlyBaseID:FBgn0261985 Length:974 Species:Drosophila melanogaster
Sequence 2:NP_501277.1 Gene:C46A5.1 / 183497 WormBaseID:WBGene00016698 Length:497 Species:Caenorhabditis elegans


Alignment Length:616 Identity:121/616 - (19%)
Similarity:213/616 - (34%) Gaps:223/616 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   382 SSGGTPMQQH---SGSESANSHNNGKPAGAGTILTITKTSRPHDNKVTSKEADSMPRK------- 436
            :..||..:.|   |.|:|.|...||        |:..:..:....|..||.....|:|       
 Worm    24 TGNGTAKKHHKRKSRSKSKNKPKNG--------LSCCRKKKKKSKKSKSKVTKKQPKKKVIKPLA 80

  Fly   437 -AWEQQSDEYDIQLDVGFIEQCTRRFESASPSPMPPAYSSGQHSPILLPTTIADAVGHQQPESGS 500
             ...:|..|..:..:|...|           :|..|...          |.:.|  |.:.|.:.:
 Worm    81 PVPNEQLGEVVLVKNVKLPE-----------TPQKPEND----------TPVKD--GLKPPRTTN 122

  Fly   501 DLITIRLQADEQGRYGFNV---KGGVDLSLPVQVSKVVPHTPADRCTPRVCEGDEVLMINGRDVH 562
            .:..|.|..:     .||:   |...|.....::.|....:|||     :.:|     :.|:.  
 Worm   123 SVEKINLSKE-----SFNLSNEKIASDNGTEEKMEKKNVDSPAD-----IQDG-----LKGKS-- 170

  Fly   563 GLRHEQVVAMIRDCRHQASGELLLTVRPQRSAPLLLEEEPLYQYVPESDEIGSHSNLLDGDALFT 627
                                       .|:|      ||.::|...:..:.|...|         
 Worm   171 ---------------------------KQKS------EEKVHQKAKDDAKRGDECN--------- 193

  Fly   628 QSLLLLSDGLASGALLAQYELMYRKNPDLAITEARK--------------PANAPKNRYRDISPY 678
             ...:..:.|....|:||..|  :.:.::|:.|..|              .:|..|||:.|:...
 Worm   194 -KFKISDEKLTKWKLVAQETL--KDDANIAVNEFEKVSGYLPPHISKNHFVSNMDKNRFVDVICM 255

  Fly   679 DCTRVSLVNSLTGDYINANYVNMEIPGGAVNRYIATQGPLASTTTDFWRMVQQESSHLLVMLTTV 743
            |.:||.|.:|   .||:||:|::    .:..:.|.||.||:.|.:|||:|:..:....::::.|.
 Worm   256 DHSRVKLTDS---SYIHANWVDL----NSSKKAILTQLPLSHTASDFWQMIIDQKIKCVLLIMTD 313

  Fly   744 MESGRQKCHQYWPV-------------TGE--ELQLAEGFSVRCLSEKPDETGSFVFREFVLKDK 793
            .|..:...:..:|.             .||  :::|.:|::::.||     ..:..::.|:    
 Worm   314 GEFNKFGGNSVFPQNQDFLKFEDRFIRVGEFKQVELGKGWNLKVLS-----VSNGTYKTFI---- 369

  Fly   794 HEQRHIHHMQYLAWPDHCVPSDPNLFLEFTERVRAARNRTLLQEIEESLKQVRLMDADADADENG 858
                |:||  |..||...:|||                          :||:..:.:......:|
 Worm   370 ----HVHH--YKNWPHGSIPSD--------------------------VKQIWQVQSYLRKYTDG 402

  Fly   859 GLMRERKCAASNGATPEDETPVSTSVHQCISAANPPVIVHCSAGIGRTGVLILMDTALALMEARE 923
                                             :|||.:..| |.||.|...|.:||...:...:
 Worm   403 ---------------------------------HPPVYMSMS-GCGRAGTFALFETAHMSLHNEQ 433

  Fly   924 PVYPLDIVR---TMRDQRACMVQNVSQYRFV 951
            |  .|::|:   .:|:.|...|||:||:..|
 Worm   434 P--SLNMVKCLENVRNGRLHSVQNLSQFSVV 462

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PtpmegNP_001163309.2 B41 35..232 CDD:214604
FERM_N 38..102 CDD:286467
FERM_M 125..232 CDD:278785
FERM_C_PTPN4_PTPN3_like 226..320 CDD:270010
FA 333..369 CDD:285894
PDZ_signaling 502..589 CDD:238492 12/89 (13%)
Y_phosphatase 666..955 CDD:278528 69/304 (23%)
PTPc 668..955 CDD:238006 68/302 (23%)
C46A5.1NP_501277.1 Y_phosphatase 243..468 CDD:278528 69/304 (23%)
PTPc 245..468 CDD:238006 68/302 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

Return to query results.
Submit another query.