DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ptpmeg and magi-1

DIOPT Version :9

Sequence 1:NP_001163309.2 Gene:Ptpmeg / 38059 FlyBaseID:FBgn0261985 Length:974 Species:Drosophila melanogaster
Sequence 2:NP_001255577.1 Gene:magi-1 / 178107 WormBaseID:WBGene00010444 Length:1054 Species:Caenorhabditis elegans


Alignment Length:486 Identity:98/486 - (20%)
Similarity:177/486 - (36%) Gaps:116/486 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   359 HKVFVRSPSKRLLGAAGGV----GTSGSSGGTPMQQ-HSGSESANSHNNGKPAGAGTILTITKTS 418
            |...|....:|.:|..|.:    |:..:...||... ..|....|..::..|..       .::.
 Worm   591 HTQLVDMLRERPIGYRGKLVVKRGSPKTRSRTPSAAFRYGEPQTNMMDSAAPLP-------VRSK 648

  Fly   419 RPHDNKVTSKEADSMPRKAWEQQ---SDEYDIQLDVGFIEQCTRRFESASP-SPMPPAYSS-GQH 478
            .|.:.:.:..|.|...|...::|   :.|::             ...||.| |.|.|:.:: |..
 Worm   649 TPAERQTSRTEEDQNVRNTLQRQPAVTSEWE-------------GMSSAIPASRMRPSSTTLGFA 700

  Fly   479 SPILLPTTIADAVGHQQPESGSDLITIRLQADEQGRYGFNVKGGVDLSLPVQVSKVVPHTPADRC 543
            :|..:|.:       |..:..|||||:.|.....| :||.:.|||:...|:.|.::|....|:. 
 Worm   701 TPNYIPLS-------QYNQKPSDLITVSLIRKPVG-FGFRLLGGVESKTPLSVGQIVIGGAAEE- 756

  Fly   544 TPRVCEGDEVLMINGRDVHGLRHEQVVAMIRDCRHQASGELLLTVRPQRSAPL----LLEEEPLY 604
            ..|:.||||::.|:|.:|.|..|.:.|.:: :...|.....|:..||.|:.|.    |....|..
 Worm   757 DGRLQEGDEIVEIDGHNVEGASHSEAVVLL-EAAAQNKHVKLIVRRPSRTDPARRGSLNSAGPSG 820

  Fly   605 QYVPESDEIGSHSNLLDGDALFTQSLLLLSDGLASGALLAQ------------------------ 645
            .|     ::..|.|..||     ...:|:|....:|:.:.|                        
 Worm   821 SY-----DVLLHRNENDG-----FGFVLMSSQHKNGSTVGQIQPGSPAARCGRLSVGDRVIAVNG 875

  Fly   646 YELMYRKNPD---------LAITEARKPANAPKNRYRDISPYDCTRVSLVNSLTGDYINANY--- 698
            .:::...:||         |::    :...||.|....:.|.....:....::.|.| .:||   
 Worm   876 IDILSLSHPDTISLIKDSGLSV----RLTIAPPNTAGPVLPMVSATLGRNFTMNGHY-ESNYGLP 935

  Fly   699 -------------VNMEIPGGAVNRYIATQGPLASTTTD-----FWRMVQ--QESSHLLVMLTTV 743
                         ..:...|.::|..::..|.|...|.:     |...::  ||...:.:.:..:
 Worm   936 PPPPSVYEKHPPPSYLAFDGLSINDRMSMNGNLIDVTLERGTKGFGFSIRGGQEFGSMPLFVLRI 1000

  Fly   744 MESGRQKCHQYWPVTGEELQLAEGFSVRCLS 774
            .:.|..|......| |::|....|.|.:.:|
 Worm  1001 ADDGPAKADGRLQV-GDQLTTINGQSTKGMS 1030

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PtpmegNP_001163309.2 B41 35..232 CDD:214604
FERM_N 38..102 CDD:286467
FERM_M 125..232 CDD:278785
FERM_C_PTPN4_PTPN3_like 226..320 CDD:270010
FA 333..369 CDD:285894 2/9 (22%)
PDZ_signaling 502..589 CDD:238492 27/86 (31%)
Y_phosphatase 666..955 CDD:278528 24/132 (18%)
PTPc 668..955 CDD:238006 23/130 (18%)
magi-1NP_001255577.1 NK 180..>244 CDD:302627
WW 263..293 CDD:238122
WW 294..323 CDD:278809
PDZ 421..510 CDD:214570
PDZ_signaling 535..600 CDD:238492 2/8 (25%)
PDZ_signaling 717..800 CDD:238492 27/85 (32%)
PDZ_signaling 822..902 CDD:238492 12/93 (13%)
PDZ_signaling 968..1049 CDD:238492 13/64 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.