DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ptpmeg and Ect2l

DIOPT Version :9

Sequence 1:NP_001163309.2 Gene:Ptpmeg / 38059 FlyBaseID:FBgn0261985 Length:974 Species:Drosophila melanogaster
Sequence 2:XP_038949113.1 Gene:Ect2l / 103689991 RGDID:9246970 Length:986 Species:Rattus norvegicus


Alignment Length:1053 Identity:197/1053 - (18%)
Similarity:346/1053 - (32%) Gaps:343/1053 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 LARDKKTPQRQQCVTVLFLDDITHTFRIEKRAKGSELLDQ-----VFQYLE-------------- 68
            |:|..|:..|       |:.|.....:...|...|.:|.:     :|.:|.              
  Rat    63 LSRSSKSQLR-------FIQDWLSERKQVARVDFSTVLPRCISLYIFSFLNPKDLCAAAQVSWPW 120

  Fly    69 --LSERD--------YFGLLFPQKP--GDVVRWVDAQKQFKKQCSSVSLDNDAVPLLEFRVKFFV 121
              |:|:|        .||...|..|  .:...|    ||....|.| ||| ...|.....|...:
  Rat   121 KFLTEQDCLWMPKCTRFGWFLPYAPTRNEYGAW----KQHYIACVS-SLD-WLTPREAAAVYGTL 179

  Fly   122 SDP--------SRLQEEFTRYQFYLQI---KRNILLGKLPCSSNTQCLLASYTVQSELGDFNALE 175
            ::|        .|.:|:..|...:.:|   |:.:...:.|..:.|:|   |.:::        ..
  Rat   180 NEPKTEDEELQERQREKCLRKTIWEKIALRKKELFKARPPWLTGTRC---SRSLK--------CT 233

  Fly   176 HQPGYLSGMQLLCDQTTEAERKVGELHKLHRGQLP----ADAEYNYLEHAKRLELYGIDLHRATD 236
            ..||   |.||..|:|...|....:..:.....||    ....::||...|:..   .:|.|..|
  Rat   234 SLPG---GPQLWRDRTGFCEALERQFLRASLDALPQRSNISGSHSYLSLLKKSH---PELGRTDD 292

  Fly   237 SN----------------GKELQLGVSAVGLLVFQ---HSLRVNTFSWSKMVKVSFKRKDFFIQL 282
            |:                ..|:.||..|..|.|||   .:|...|:.|..:       |...:.:
  Rat   293 SSSCESPLHVILISSRIPAYEVPLGEGATPLTVFQLHGQNLLAATWCWIGV-------KAGVVAV 350

  Fly   283 RREP-SENYDTLL-------------GFGMSSHKHAKAL-----WKSCVEHHSFFRLKRPHRLSR 328
            ..|| ...::.||             |.|:.|..:::.:     :|.|:::     |..| .:..
  Rat   351 LYEPRGVTFEGLLHLLGRAQQGRKAQGLGIFSSGNSREIDLLQGYKICIKN-----LLWP-EVRD 409

  Fly   329 FLNISLGSKF---YYSGRTELQAVQESKQRGRIHKVFVRSPSKRLLG----AAGGVGTSGSSGGT 386
            |....|||..   ...|..:|.....:.:.|    :.|.|...:|.|    |..||.|     |:
  Rat   410 FWEKKLGSCLTTEEEGGHVDLFVPLGASETG----IEVLSLLSQLTGTSFSAPAGVAT-----GS 465

  Fly   387 PMQQHSGSESANSHNNGKPAGAGTILTITKTSRPHDNKVTSKEADSMPRKAWEQQSD--EYDIQL 449
            .:.||..|:....|.:|.|.....|          ::|:          :||...::  |..::.
  Rat   466 YLTQHILSDWLGPHRDGTPLSNYFI----------ESKL----------QAWSSFTEFLEDTLKS 510

  Fly   450 DVGFIEQCTRRFESASPSPM--PPAYSSGQHSPIL----LPTTIADAVGHQQPESGSD------- 501
            ... :.:.:|....||.:.|  ...:.:.....||    :...:||.:...|.:.. |       
  Rat   511 VRKXLSRSSRTCRRASVARMIGSSCFDTLGMDSILNNQGVAQALADGLMSCQKKGLXDKPLEFLS 575

  Fly   502 --LI--TIRLQADEQGRYGFNVKGGVDL--SLPVQVSKVVPHTPADRCTPRV------------- 547
              |:  :.:...|.:|.|....:|..:.   |..:.|.:..::...:.:||.             
  Rat   576 YFLLKKSSKKNEDFEGDYVLTERGLKETQDXLMKERSSIEDNSQDTKSSPRQSNLNMEALTTLER 640

  Fly   548 -CEGDEV---------LMINGRDVHGLRHEQVVAMIRDCRHQASGELLLTVRPQRSAPLLLEEEP 602
             .:.|.|         |:.:.|     |:.|.:.::||          :..||.|:|        
  Rat   641 RLQMDSVEKRTRVVKELVQSER-----RYVQTLGIVRD----------VYARPLRAA-------- 682

  Fly   603 LYQYVPESDEIGSHSNLLDGDALFTQSLLLLS------DGLAS------------------GALL 643
                :..:..|.|.:|:   ..:|:.:|.:|:      |.|..                  |:.|
  Rat   683 ----LSSNRAILSAANI---HIIFSDTLHILNLNREFLDNLRDRLQEWSPAHCVGEIFIKFGSQL 740

  Fly   644 AQYELMYRKNPDLAITEARKPANAPKNRYRDISPYDCTRVSLVNSLT----------GDYINANY 698
            ..|...:...|.:..|..:....||..| ..:..:|.|.|:.:.||.          .:||:..|
  Rat   741 NVYTNFFNNYPVVLKTIEKCREMAPAFR-AFLKRHDRTIVTKMLSLPELLLYPSRRFEEYIHLLY 804

  Fly   699 -VNMEIPGGAVNR---------------YI-------ATQGPLASTTTDFWRM-VQQESSHLLVM 739
             :.:..|.|.|:|               ||       ..:..|:...|..|.. ...|::..|:.
  Rat   805 ALRLHTPAGHVDRGNLTTAIEQIKKYKDYIDQIKENFKMREQLSDIQTLIWGCPTLSEANRYLIR 869

  Fly   740 LTTVMESGRQKCHQYWPVTGEELQLAE---GFSVRCLSEKPDETGSFVFREFVLKDKHEQRHIHH 801
            :..|:                :||..|   .|.:| |.|:..:...|:|.:.:|.......|   
  Rat   870 IQDVV----------------QLQCCEEKTEFYLR-LYEQTQDLSLFLFSDVLLVTSRSTSH--- 914

  Fly   802 MQYLAWPDHCVPSDPNLFLEFTERVRAARNRTLLQEIEES--LKQVRLMDADADADENGGLMRER 864
                      .|.:......:......|..|.|:::|.:|  :|...::         .||.|:.
  Rat   915 ----------TPFEKTCKTTYRFSASVALPRVLIEDIPDSRYIKNAFVL---------RGLKRDW 960

  Fly   865 KCAASNGATPEDE 877
            .||..   :|:|:
  Rat   961 ICATE---SPDDK 970

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PtpmegNP_001163309.2 B41 35..232 CDD:214604 47/242 (19%)
FERM_N 38..102 CDD:286467 18/94 (19%)
FERM_M 125..232 CDD:278785 22/113 (19%)
FERM_C_PTPN4_PTPN3_like 226..320 CDD:270010 25/131 (19%)
FA 333..369 CDD:285894 8/38 (21%)
PDZ_signaling 502..589 CDD:238492 17/113 (15%)
Y_phosphatase 666..955 CDD:278528 48/251 (19%)
PTPc 668..955 CDD:238006 47/249 (19%)
Ect2lXP_038949113.1 F-box-like 93..130 CDD:403981 6/36 (17%)
DUF4347 302..499 CDD:405015 49/238 (21%)
RhoGEF 653..835 CDD:395496 39/212 (18%)
PH-like <894..982 CDD:418428 18/102 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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