DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ptpmeg and il16

DIOPT Version :9

Sequence 1:NP_001163309.2 Gene:Ptpmeg / 38059 FlyBaseID:FBgn0261985 Length:974 Species:Drosophila melanogaster
Sequence 2:XP_021333386.1 Gene:il16 / 100534674 ZFINID:ZDB-GENE-130103-3 Length:1540 Species:Danio rerio


Alignment Length:829 Identity:152/829 - (18%)
Similarity:241/829 - (29%) Gaps:312/829 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   201 LHKLHRGQLPADAEYNYLEH-------AKRLELYGIDLHRATDSNGKELQLGVSAVGLLVFQHSL 258
            |..:|.|:.|.......|.:       .||:|            .||   .|:|:..|.|...||
Zfish    10 LAAMHAGREPPSVAIQPLRNTHPQRRRTKRME------------RGK---AGLSSKKLAVLSRSL 59

  Fly   259 RVNTFSWSKMVKVSFKRKDFFIQLRREPSENY--------------DTLLGFGMS------SHKH 303
                     ::..|...:|     ...|.|.|              .||:...:|      .|:.
Zfish    60 ---------LICSSSAHED-----ASSPEEKYREPWDVPLEDRRPDGTLMSRSVSVQTSYRGHEG 110

  Fly   304 AK------------ALWKSCVE------HHSFFRLKR-------PHRLSRFLNISLGSKFY-YSG 342
            .|            :.|:.||.      |.:..:|:.       ...|.|...|..|.:.. ::|
Zfish   111 PKRAMRRSFSIKETSFWRMCVATRDDALHTADRKLQNCDNEASVAQDLHRETYIYFGERLAPFNG 175

  Fly   343 RT---------ELQAVQESKQRGRIHKVFVR--------SPSKRLLGAAGGVGTSGSSGGTPM-- 388
            :.         :|...:.::.|....|.|..        :.|::|....|.....|::....|  
Zfish   176 QVINEQPNPEPDLHKHKTTESRNTSSKAFTENRALFTNTTESQQLGYGYGEKEPMGNNNNLQMPI 240

  Fly   389 ------------------QQHSGSESANSHNNGKPAGAGTILT-ITKTSRPHDNKVTSKEADSMP 434
                              |:.|...|.::..:..|...|.:.| |.||.........:..|....
Zfish   241 IKVSDDDVKDIDNEDQGCQEMSCKRSRSNSTSVHPYWIGDLETIIMKTPELFPCSAHNTAAFYGN 305

  Fly   435 RKAWEQQSDEYDIQLDVGFIEQCTRRFESASPSPMPPAYSSGQHSPILLPTTIADAVGHQQPESG 499
            ||:..||     ::......:...|...|.|.:.:.|:.||.|   ..:.:.|....||     |
Zfish   306 RKSLSQQ-----LEFPHSVPQAVVRPSRSLSSAHLVPSCSSVQ---AFIISNIVLMKGH-----G 357

  Fly   500 SDLITIRLQADEQGRYGFNVKGGVDL---SLPVQVSKVVPHTPADRCTPRVCEGDEVLMINGRDV 561
            ..|             ||::.||.|.   .:.:.|..:.|...| ....|:.||||:|.:||..:
Zfish   358 KGL-------------GFSIVGGRDSMYGPMGIYVKTIFPGGAA-AADGRLQEGDEILELNGESL 408

  Fly   562 HGLRHEQVVAMIRDCRHQASGELLLTVRPQRSAPLLLEEEPLYQYVPESDEIGSHSNLLDGDALF 626
            |||.||..:...:..:   .|.|.|.||.......::               |||     |.|  
Zfish   409 HGLTHEDALHKFKQVK---KGLLTLVVRTSLRVGAVM---------------GSH-----GQA-- 448

  Fly   627 TQSLLLLSDGLASGALLAQYELMYRKNPDLAITEARKPANAPKNRYRDISPYDCTRVSLVNSLTG 691
              |.|..|..|:|...:::..                         .|:..|:|    |:|....
Zfish   449 --SQLCRSRSLSSSTAISRVS-------------------------ADLGEYNC----LINPAKA 482

  Fly   692 DYINANYVNMEI-------------------PGGAVNRYIATQGPLASTTTDFWRMVQQESSHLL 737
            .    :.:.|||                   .||....||.|..|.:....|             
Zfish   483 Q----DRIMMEITLHKEFGVGLGIGLCCVPSSGGCPGIYIHTLSPGSVVHMD------------- 530

  Fly   738 VMLTTVMESGRQKCHQYWPVTGEELQLAEGFSVRCLSEKPDETGSFVFREFVLKDKHEQRHIHHM 802
                     ||.:|       |:|:.               |....|.....|.|.:...     
Zfish   531 ---------GRLRC-------GDEIM---------------EINETVVCNMTLNDVYTVL----- 559

  Fly   803 QYLAWPDHCVPSDPNLFLEFTERVRAARNRTLLQEIEESLKQVRLMDADADADENGGLMRERKCA 867
                  ..|.|...::.:.     |....:...|::.|::.|         |.||..|.::|...
Zfish   560 ------SQCSPGPVHIIIS-----RHPDPKVSEQQLNEAISQ---------AVENSRLRKDRSQW 604

  Fly   868 ASNGATPEDETPVST--SVHQCISAAN------------PPVIVHCSAG 902
            :.:|.......|.|.  |..:|:...:            .|:|..||.|
Zfish   605 SMDGCNSSLRRPESCCHSRQKCMRCVDRSTSQLTCRRTQKPMIRSCSEG 653

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PtpmegNP_001163309.2 B41 35..232 CDD:214604 8/37 (22%)
FERM_N 38..102 CDD:286467
FERM_M 125..232 CDD:278785 8/37 (22%)
FERM_C_PTPN4_PTPN3_like 226..320 CDD:270010 22/131 (17%)
FA 333..369 CDD:285894 7/53 (13%)
PDZ_signaling 502..589 CDD:238492 25/89 (28%)
Y_phosphatase 666..955 CDD:278528 45/270 (17%)
PTPc 668..955 CDD:238006 45/268 (17%)
il16XP_021333386.1 PDZ_signaling 350..433 CDD:238492 29/104 (28%)
PDZ_signaling 489..571 CDD:238492 20/136 (15%)
MGC-24 620..>696 CDD:310122 7/34 (21%)
GREB1 <795..>990 CDD:318077
Atrophin-1 1006..>1234 CDD:331285
PDZ_signaling 1331..1406 CDD:238492
PDZ 1448..1535 CDD:214570
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.