DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ptpmeg and farp1

DIOPT Version :9

Sequence 1:NP_001163309.2 Gene:Ptpmeg / 38059 FlyBaseID:FBgn0261985 Length:974 Species:Drosophila melanogaster
Sequence 2:XP_017211441.1 Gene:farp1 / 100329707 ZFINID:ZDB-GENE-070424-163 Length:1041 Species:Danio rerio


Alignment Length:1024 Identity:264/1024 - (25%)
Similarity:392/1024 - (38%) Gaps:315/1024 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 PQRQQCVTVLFLDDITHTFRIEKRAKGSELLDQVFQYLELSERDYFGLLFPQKPGDVVRWVDAQK 94
            |.||..:.|..|||....|.:.:||.|..|.|.|..:|.|.|.|||||.| |....::.|:|..|
Zfish    37 PGRQISIRVQMLDDTQEVFEVSQRAPGKALFDLVCSHLNLVEGDYFGLEF-QDQRKMIVWLDLLK 100

  Fly    95 QFKKQCSSVSLDNDAVPLLEFRVKFFVSDPSRLQEEFTRYQFYLQIKRNILLGKLPCSSNTQCLL 159
            ...||     :......:|.|.||||..|.::|.||.|||.|.||||.::..|:|.|:.::..||
Zfish   101 PILKQ-----IRRPKNIILRFVVKFFPPDHTQLLEELTRYLFALQIKHDLACGRLTCNESSAALL 160

  Fly   160 ASYTVQSELGDFNALEHQPGYLSGMQLLCDQTTEAERKVGELHKLHRGQLPADAEYNYLEHAKRL 224
            .::.||||:|||:.::.:. :|...:.:.:|.|..::.:| .|:.|.||.||:::|..||.|:||
Zfish   161 VAHIVQSEIGDFDEVQCKQ-HLLNNKYIPEQDTLMDKIIG-YHRKHVGQTPAESDYQLLEIARRL 223

  Fly   225 ELYGIDLHRATDSNGKELQLGVSAVGLLVFQHSLRVNTFSWSKMVKVSFKRKDFFIQLRREPSE- 288
            |:||:.||.|.|..|..|.|.|:..|:||||...::|.|:|||:.|:|||||.|.|:||.:.:: 
Zfish   224 EMYGVRLHPAKDREGTRLSLAVAHSGVLVFQGHTKINAFNWSKVRKLSFKRKRFLIKLRPDLNQS 288

  Fly   289 NYDTLLGFGMSSHKHAKALWKSCVEHHSFFRL-KRPHRLSRFLNISLGSKFYYSGRTELQAVQES 352
            |....|.|.|.|....|..||.|||:|:|||| :.|....:.:..:.||.|.:||||:.|.:...
Zfish   289 NCQDTLEFMMGSRDCCKVFWKICVEYHAFFRLFEEPKPKPKPVLFTRGSSFRFSGRTQRQVIDYV 353

  Fly   353 KQRGRIHKV-FVRS-------------PSKRLLGAAGGVG--------TSGSSGGTP-------- 387
            |.. ...|| |.|.             ||::   :|.|.|        .||....:|        
Zfish   354 KDT-EFKKVPFERKHSKIQSNSNLSPFPSRQ---SAEGQGEMLQRNASASGHQADSPLGRTQVTV 414

  Fly   388 ----MQQHSGSESANSHNNGKPAGAGTILTITKTSRPHDNKVTSKEADSMPRKAWEQQSDEYDIQ 448
                :|:::|  |.||..||...|                  ||.|||:..:.:..:|..|:   
Zfish   415 ENPALQRYTG--SLNSQTNGCRNG------------------TSDEADARLKPSPSKQQAEH--- 456

  Fly   449 LDVGFIEQCTRRFESASPSPMPPAYSSGQHSPILLPTTIADAVGHQQPESGSDLITIRLQADEQG 513
            |..|.          ||.|...|...|.|||              :.|.:|..::          
Zfish   457 LSTGL----------ASHSAKGPVSRSPQHS--------------ESPSAGQMMV---------- 487

  Fly   514 RYGFNVKGGVDLSLPVQVSKVVP--HTPADRCTPRVCEGDEVLMINGRDVHGLRHEQVVAMIRDC 576
                   .|...||.|..|   |  ..|:...:|.:.:..   .|...|...:|.::...   |.
Zfish   488 -------NGQKQSLSVGQS---PDGRQPSPLTSPLLYDAG---FIRADDEDEVRRKRFPT---DK 536

  Fly   577 RHQASGELLLTVR-----------------------PQRSAPLLLEE-EPLYQYVPESDEIGSHS 617
            .:..:.|||.|.|                       |.....|:... ||:|::         |.
Zfish   537 AYFIAKELLTTERTYLKDLEVITVSFQKAVLKDEAMPDSLRNLIFANFEPVYKF---------HE 592

  Fly   618 NLLD------------------------GDALF--TQSLLLLSDGLA--SGALLAQYELMYRKNP 654
            ..|.                        ||.:.  .|.|.|||..|.  |.:|| :.|...|.:.
Zfish   593 TFLKDVEQRLAQWEGRSNAHIKGDYQRVGDVMLKNIQGLKLLSSHLQKHSESLL-ELEQSCRSSR 656

  Fly   655 DLAIT----EARKPANAPKN-----------RYRDISPYDC------------TRVSLVN----- 687
            .|.:.    |.:|....|.|           .|:.|....|            :|.:|.:     
Zfish   657 RLEVLCRDFELQKVCYLPLNIFFLRPLHRLLHYKQILERLCKHYPPTHDDFRDSRAALADVSELV 721

  Fly   688 -----------------SLTGDYINANYVNMEIPGGAVNRYIATQGPLASTTTDFWRMVQQESSH 735
                             .|..|.:..:  ::..||    |.....|.|:..:   .:.:||....
Zfish   722 LQLHTTLMKMENFQKLLELKKDLVGID--SLAAPG----REFIRLGCLSKLS---GKGLQQRMFF 777

  Fly   736 L---LVMLTT--VMESGRQKCHQYWPVTGEELQLAEGFSVRCLSEKPDETGSFVFREFVLKDKHE 795
            |   :||.|:  :..|.:.|.|...|:.|..::           |..||.|              
Zfish   778 LFSDVVMYTSRGLTASNQFKVHGQLPLYGMTIR-----------ESEDEWG-------------- 817

  Fly   796 QRHIHHMQYLAWPDHCVPSDPNLFLEFTERVRAARNRTLLQEIEESLKQVRLMDADADADENGGL 860
                            ||....||.:....|.||.:.:   |:|:.::.:|:....|| ..||..
Zfish   818 ----------------VPYSFTLFGQRQSVVVAASSAS---EMEKWIEDIRMAIELAD-KSNGPT 862

  Fly   861 MRERKCAASNGATPED--------------------ETP--VSTSVHQC 887
            ......:.|:..:|||                    :||  .:|:||.|
Zfish   863 TEILSSSFSDSKSPEDCSADQESEDDLSSSRSSLERQTPHRGNTTVHVC 911

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PtpmegNP_001163309.2 B41 35..232 CDD:214604 75/196 (38%)
FERM_N 38..102 CDD:286467 26/63 (41%)
FERM_M 125..232 CDD:278785 42/106 (40%)
FERM_C_PTPN4_PTPN3_like 226..320 CDD:270010 44/94 (47%)
FA 333..369 CDD:285894 15/49 (31%)
PDZ_signaling 502..589 CDD:238492 16/88 (18%)
Y_phosphatase 666..955 CDD:278528 53/294 (18%)
PTPc 668..955 CDD:238006 53/292 (18%)
farp1XP_017211441.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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