DRSC/TRiP Functional Genomics Resources

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Protein Alignment Atac3 and gabpb2

DIOPT Version :9

Sequence 1:NP_001246531.1 Gene:Atac3 / 38055 FlyBaseID:FBgn0052343 Length:583 Species:Drosophila melanogaster
Sequence 2:XP_017951779.1 Gene:gabpb2 / 733936 XenbaseID:XB-GENE-955082 Length:392 Species:Xenopus tropicalis


Alignment Length:469 Identity:130/469 - (27%)
Similarity:205/469 - (43%) Gaps:109/469 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    52 VDLGKQLLQCARDSDVAGVKAALAHGAPFASDWLGMSALHFAAMNNQLEICEILLQGGINMDGKT 116
            :||||:||:.||..:...::..:.:||||.:||||.|.||.||........::|||.||:.|.:|
 Frog     3 LDLGKRLLEAARCGEDNEIRLLMQNGAPFTTDWLGTSPLHLAAQYGHYSTVKVLLQAGISRDART 67

  Fly   117 KVDRTPLHLACYYGHERIVSLLLALKCSVNSRDMLRMTPLHWAVEKKHKGIVRLLLKCQADVTLV 181
            ||||||||:|...||..||.||:....:||:||||.||.||||.|..|..:|.||:|..|||...
 Frog    68 KVDRTPLHMAAADGHTPIVDLLIKNGANVNARDMLEMTALHWASEHNHHDVVHLLIKSGADVNSY 132

  Fly   182 SKFGKTPIGLAVYTEQADVLAELEAARQAQASKKLHEESEQQAHKTKKETNEAVSSIMDEPEVIK 246
            :|||||||.:|:.....::|..::.|.|.:.             :|::....:|||    |:.| 
 Frog   133 NKFGKTPIDIALDKNNHELLVTMQEALQGKP-------------RTRRPNVISVSS----PQYI- 179

  Fly   247 TVDDKEMSVEERMDVLENMRGHANVLRNTALYILKTH----EIADMVQDNDDEDSKEMLNTALQN 307
                              :...|||        ..:|    |:..:     |...::|    :||
 Frog   180 ------------------LAPVANV--------KSSHGQGAEVVTL-----DPSVQQM----VQN 209

  Fly   308 GRQLVL---SEGGRMLLHETKSGISGKQSTNGNARPSVAALRTNVNNSHPK-------------I 356
            |.|.|:   ::|.::      ..:.|:.|........:..::.....|.|.             :
 Frog   210 GGQRVITIVTDGIQL------GSLQGQLSVGSLCSAPLVTIQNGAEGSLPNAHSLAVEVAEEQVV 268

  Fly   357 RMNVLKQKDLPSPAGVAKNKNIRIISLTDFKKLYGSDSTAKSL---QKIPASLASSGMVRHLPDG 418
            ...|:.:...|||..    |..|:.|:...:...|:...|:.|   |...|:|.:....:.|.: 
 Frog   269 EETVVVEVSPPSPPA----KKYRVTSVATEEGPEGNRVQARQLLEQQLKEANLRAREFRQQLRE- 328

  Fly   419 TKLVNMRQLQARQLKLPSLQRPQ----DLTALEESHSQNEAAVPSPLPSGHPASGSSLRG-QVGT 478
                ..::.:|.::||.||:|.|    ..|.:||    .:..:         .|...|.| :|..
 Frog   329 ----KEQEAEAYRVKLESLERQQVNGDSFTVVEE----GDTII---------VSAEELAGVEVTE 376

  Fly   479 VQTIQLRPSLSAGS 492
            |:|::....:.|.|
 Frog   377 VETVEQHCDIPAES 390

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Atac3NP_001246531.1 Ank_4 58..106 CDD:290365 17/47 (36%)
ANK repeat 58..83 CDD:293786 8/24 (33%)
ANK 81..204 CDD:238125 61/122 (50%)
ANK repeat 88..116 CDD:293786 11/27 (41%)
Ank_2 90..181 CDD:289560 47/90 (52%)
ANK repeat 118..149 CDD:293786 16/30 (53%)
ANK repeat 151..181 CDD:293786 16/29 (55%)
ANK repeat 184..211 CDD:293786 10/26 (38%)
gabpb2XP_017951779.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002988
OrthoInspector 1 1.000 - - otm49348
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1982
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.000

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