DRSC/TRiP Functional Genomics Resources

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Protein Alignment Atac3 and Gabpb1

DIOPT Version :10

Sequence 1:NP_001246531.1 Gene:Atac3 / 38055 FlyBaseID:FBgn0052343 Length:583 Species:Drosophila melanogaster
Sequence 2:NP_001385852.1 Gene:Gabpb1 / 499883 RGDID:1560391 Length:383 Species:Rattus norvegicus


Alignment Length:545 Identity:127/545 - (23%)
Similarity:198/545 - (36%) Gaps:204/545 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    52 VDLGKQLLQCARDSDVAGVKAALAHGAPFASDWLGMSALHFAAMNNQLEICEILLQGGINMDGKT 116
            |||||:||:.||......|:..:|:||||.:||||.|.||.||........|:||:.|::.|.:|
  Rat     4 VDLGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHYSTTEVLLRAGVSRDART 68

  Fly   117 KVDRTPLHLACYYGHERIVSLLLALKCSVNSRDMLRMTPLHWAVEKKHKGIVRLLLKCQADVTLV 181
            ||||||||:|...||..||.:||.....||::|||:||.||||.|..|:.:|.||:|..|||...
  Rat    69 KVDRTPLHMAASEGHASIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQ 133

  Fly   182 SKFGKTPIGLAVYTEQADVLAELEAARQAQASKKLHEESEQQAHKTKKETNEAVSSIMDEPEVIK 246
            |||.||...:::                                                     
  Rat   134 SKFCKTAFDISI----------------------------------------------------- 145

  Fly   247 TVDDKEMSVEERMDVLENMRGHANVLRNTALYILKTHEIADMVQDNDDEDSKEMLNTALQN---- 307
                                                        ||.:||..|:|..|:||    
  Rat   146 --------------------------------------------DNGNEDLAEILQIAMQNQINT 166

  Fly   308 -------------GRQLVLSEGGRMLLHETKSGISGKQSTNGNARPSVAALRTNVNNSHPKIRMN 359
                         ..|.::..||.:.|.: ::|:|..|.  ||:..||.|            .:.
  Rat   167 NPESPDTVTIHAATPQFIIGPGGVVNLTD-ETGVSAVQF--GNSSTSVLA------------TLA 216

  Fly   360 VLKQKDLPSPAGVAKNKNIRIISLTDFKKLYGSDSTAKSLQKIPASLASSG---MVRHLPDGTKL 421
            .|.:...|    ::.:....:::..:.       .||:|:......:.|||   ::..:.||.:|
  Rat   217 ALAEASAP----LSNSSETPVVATEEV-------VTAESVDGAIQQVVSSGGQQVITIVTDGIQL 270

  Fly   422 VNMRQLQARQLKLPSLQRPQDLTALEESHSQNEAAVPSPLPSGHPASGSSLRGQVGTVQTIQLRP 486
            .|:..:....:..|                     :...:|.|.         ||.||       
  Rat   271 GNLHSIPTSGMGQP---------------------IIVTMPDGQ---------QVLTV------- 298

  Fly   487 SLSAGSGQGAVNNGAAPGKTIVNATKQSPKSPNVMPLLTSSEICRQLHELRRQNEDLRRRADSFQ 551
                            |...|...|..|.:.|       :...|.::.|.|.::.::..| ::.|
  Rat   299 ----------------PATDIAEETVISEEPP-------AKRQCMEIIENRVESAEIEER-EALQ 339

  Fly   552 REKEEMLRRIDRLEQMVLVQESEAD 576
            ::.:|..|...:..|.:|.:|.||:
  Rat   340 KQLDEANREAQKYRQQLLKKEQEAE 364

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Atac3NP_001246531.1 ANKYR <58..251 CDD:440430 65/192 (34%)
ANK repeat 58..83 CDD:293786 10/24 (42%)
ANK repeat 88..116 CDD:293786 10/27 (37%)
ANK repeat 118..149 CDD:293786 16/30 (53%)
ANK repeat 151..181 CDD:293786 16/29 (55%)
ANK repeat 184..211 CDD:293786 3/26 (12%)
Gabpb1NP_001385852.1 ANKYR <10..179 CDD:440430 74/265 (28%)
ANK repeat 10..35 CDD:293786 10/24 (42%)
ANK repeat 38..68 CDD:293786 11/29 (38%)
ANK repeat 70..101 CDD:293786 16/30 (53%)
ANK repeat 103..133 CDD:293786 16/29 (55%)
Stathmin 294..>371 CDD:459956 21/102 (21%)

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