DRSC/TRiP Functional Genomics Resources

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Protein Alignment Atac3 and gabpb1

DIOPT Version :10

Sequence 1:NP_001246531.1 Gene:Atac3 / 38055 FlyBaseID:FBgn0052343 Length:583 Species:Drosophila melanogaster
Sequence 2:NP_001007484.1 Gene:gabpb1 / 493213 XenbaseID:XB-GENE-993505 Length:404 Species:Xenopus tropicalis


Alignment Length:443 Identity:123/443 - (27%)
Similarity:194/443 - (43%) Gaps:101/443 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    52 VDLGKQLLQCARDSDVAGVKAALAHGAPFASDWLGMSALHFAAMNNQLEICEILLQGGINMDGKT 116
            |||||:||:.||......|:..:|:||||.:||||.|.||.||........|:||:.|::.|.:|
 Frog     4 VDLGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHYSTTEVLLRAGVSRDART 68

  Fly   117 KVDRTPLHLACYYGHERIVSLLLALKCSVNSRDMLRMTPLHWAVEKKHKGIVRLLLKCQADVTLV 181
            ||||||||:|...||..||.:|:.....:|::|||:||.||||.|..|:.:|.||:|..|||...
 Frog    69 KVDRTPLHMAASEGHANIVEVLIKHGADINAKDMLKMTALHWATEHNHQEVVELLIKYGADVHSQ 133

  Fly   182 SKFGKTPIGLAVYTEQADVLAELEAARQAQASKKLHEESEQQAHKTKKETNEAVSSIMDEPE--- 243
            |||.||...::|.....|:...|:.|.|.|.:             |..|:.:.|:.....|:   
 Frog   134 SKFCKTAFDISVDNGNEDLAEILQIAMQNQIN-------------TNPESPDTVTIHTATPQFFI 185

  Fly   244 ----VIKTVDDKEMSV-----EERMDVLENMRGHANV---LRNTA-LYILKTHEIADMVQDNDDE 295
                |:...||..:|.     .....||..:...|..   |.|:: ..::.|.|:.         
 Frog   186 GPGGVVNLTDDSGVSSTVQFGNSSTSVLATLAALAEASAPLSNSSETPVVATEEVV--------- 241

  Fly   296 DSKEMLNTALQNGRQLVLSEGGRMLLHETKSGI--SGKQS---TNGNARPSVAAL---------- 345
             :.|.::.|:|.    |:|.||:.::.....||  ...||   |:|..:|.:..:          
 Frog   242 -TAESVDGAIQQ----VVSSGGQQVITIVTDGIHLGSLQSAIPTSGIGQPIIVTMPDGQQVLTVP 301

  Fly   346 ------RTNVNNSHPKIR--MNVLKQK------DLPSPAGVAKNKNIRIISLTDF--------KK 388
                  .|.::...|..|  :.:::.:      ::|..:|    ..|.|::..:|        |:
 Frog   302 ATDIAEETVISEEPPSKRQCIEIIENRVESAEIEIPETSG----SEIYIVNTQEFSQERETLQKQ 362

  Fly   389 LYGSDSTAKSLQKIPASLASSGMVRHLPDGTKLVNMRQLQARQLKLPSLQRPQ 441
            |   |...:..||....|              |...::.:|.:.||.::.|.|
 Frog   363 L---DEANREAQKYRQQL--------------LKKEQEAEAYRQKLEAMTRLQ 398

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Atac3NP_001246531.1 ANKYR <58..251 CDD:440430 75/199 (38%)
ANK repeat 58..83 CDD:293786 10/24 (42%)
ANK repeat 88..116 CDD:293786 10/27 (37%)
ANK repeat 118..149 CDD:293786 14/30 (47%)
ANK repeat 151..181 CDD:293786 16/29 (55%)
ANK repeat 184..211 CDD:293786 8/26 (31%)
gabpb1NP_001007484.1 ANKYR <10..179 CDD:440430 72/181 (40%)
ANK repeat 10..35 CDD:293786 10/24 (42%)
ANK repeat 38..68 CDD:293786 11/29 (38%)
ANK repeat 70..101 CDD:293786 14/30 (47%)
ANK repeat 103..133 CDD:293786 16/29 (55%)

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