DRSC/TRiP Functional Genomics Resources

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Protein Alignment Atac3 and Gabpb1l

DIOPT Version :10

Sequence 1:NP_001246531.1 Gene:Atac3 / 38055 FlyBaseID:FBgn0052343 Length:583 Species:Drosophila melanogaster
Sequence 2:NP_001128487.1 Gene:Gabpb1l / 364738 RGDID:1310235 Length:383 Species:Rattus norvegicus


Alignment Length:542 Identity:124/542 - (22%)
Similarity:202/542 - (37%) Gaps:198/542 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    52 VDLGKQLLQCARDSDVAGVKAALAHGAPFASDWLGMSALHFAAMNNQLEICEILLQGGINMDGKT 116
            |||||:||:.||......|:..:|:||||.:||||.|.||.||........|:||:.|::.|.:|
  Rat     4 VDLGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHYSTTEVLLRAGVSRDART 68

  Fly   117 KVDRTPLHLACYYGHERIVSLLLALKCSVNSRDMLRMTPLHWAVEKKHKGIVRLLLKCQADVTLV 181
            ||||||||:|...||..||.:||.....||::|||:||.||||.|..|:.:|.||:|..|||...
  Rat    69 KVDRTPLHMAASEGHASIVEVLLKHGADVNAKDMLKMTALHWATEHIHQEVVELLIKYGADVHTQ 133

  Fly   182 SKFGKTPIGLAVYTEQADVLAELEAARQAQASKKLHEESEQQAHKTKKETNEAVSSIMDEPEVIK 246
            |||.||...:::                                                     
  Rat   134 SKFCKTAFDISI----------------------------------------------------- 145

  Fly   247 TVDDKEMSVEERMDVLENMRGHANVLRNTALYILKTHEIADMVQDNDDEDSKEMLNTALQN---- 307
                                                        ||.:||..|:|..|:||    
  Rat   146 --------------------------------------------DNGNEDLAEILQIAMQNQINT 166

  Fly   308 -------------GRQLVLSEGGRMLLHETKSGISGKQSTNGNARPSVAALRTNVNNSHPKIRMN 359
                         ..|.::..||.:.|.: ::|:|..|.  ||:..||.|            .:.
  Rat   167 NPESPDTVTIHAATPQFIIGPGGVVNLTD-ETGVSAVQF--GNSSTSVLA------------TLA 216

  Fly   360 VLKQKDLPSPAGVAKNKNIRIISLTDFKKLYGSDSTAKSLQKIPASLASSGMVRHLPDGTKLVNM 424
            .|.:...|    ::.:....:::.   :::..::|...::|::.:|:... ::..:.||.:|.|:
  Rat   217 ALAEASAP----LSNSSETPVVAT---EEVVTAESVDGAIQQVVSSVGQQ-VITIVTDGIQLGNL 273

  Fly   425 RQLQARQLKLPSLQRPQDLTALEESHSQNEAAVPSPLPSGHPASGSSLRGQVGTVQTIQLRPSLS 489
            ..:....:..|                     :...:|.|.         ||.||          
  Rat   274 HSIPTSGMGQP---------------------IIVTMPDGQ---------QVLTV---------- 298

  Fly   490 AGSGQGAVNNGAAPGKTIVNATKQSPKSPNVMPLLTSSEICRQLHELRRQNEDLRRRADSFQREK 554
                         |...|...|..|.:.|       :...|.::.|.|.::.::..| ::.|::.
  Rat   299 -------------PATDIAEETVISEEPP-------AKRQCMEIIENRVESAEIEER-EALQKQL 342

  Fly   555 EEMLRRIDRLEQMVLVQESEAD 576
            :|..|...:..|.:|.:|.||:
  Rat   343 DEANREAQKYRQQLLKKEQEAE 364

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Atac3NP_001246531.1 ANKYR <58..251 CDD:440430 65/192 (34%)
ANK repeat 58..83 CDD:293786 10/24 (42%)
ANK repeat 88..116 CDD:293786 10/27 (37%)
ANK repeat 118..149 CDD:293786 16/30 (53%)
ANK repeat 151..181 CDD:293786 16/29 (55%)
ANK repeat 184..211 CDD:293786 3/26 (12%)
Gabpb1lNP_001128487.1 ANKYR <10..179 CDD:440430 74/265 (28%)
ANK repeat 10..35 CDD:293786 10/24 (42%)
ANK repeat 38..68 CDD:293786 11/29 (38%)
ANK repeat 70..101 CDD:293786 16/30 (53%)
ANK repeat 103..133 CDD:293786 16/29 (55%)
ERM_helical <329..375 CDD:466641 9/37 (24%)

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