DRSC/TRiP Functional Genomics Resources

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Protein Alignment Atac3 and Ddx54

DIOPT Version :9

Sequence 1:NP_001246531.1 Gene:Atac3 / 38055 FlyBaseID:FBgn0052343 Length:583 Species:Drosophila melanogaster
Sequence 2:NP_001178477.1 Gene:Ddx54 / 360815 RGDID:1562539 Length:874 Species:Rattus norvegicus


Alignment Length:596 Identity:118/596 - (19%)
Similarity:200/596 - (33%) Gaps:206/596 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   146 NSRDMLRMTPLHWAVEKKHK---GIVRLLLKCQADVTLVSKFGK--TPI---GLAVYTEQADVLA 202
            ::|:|:|      |..||.|   |...:.|.......::.|..|  |||   .:.|..:..||:|
  Rat    79 DTREMVR------AQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVA 137

  Fly   203 -----------------ELEAARQAQASKK--LHEESEQQAHKTKKETNEAVSSIMDEPEVIKT- 247
                             |...||.||...:  :...:.:.|.:|.|.|.|     :.:...:|| 
  Rat   138 MARTGSGKTACFLLPMFERLKARSAQTGARALILSPTRELALQTMKFTKE-----LGKFTGLKTA 197

  Fly   248 -------VDDKEMSVEERMDVLENMRG---HANVLRNTALYILKTHEIADMVQDNDD-------- 294
                   ::|:..::.|..|::....|   |..|..|     ||...:..:|.|..|        
  Rat   198 LILGGDKMEDQFAALHENPDIIIATPGRLVHVAVEMN-----LKLQSVEYVVFDEADRLFEMGFA 257

  Fly   295 EDSKEMLNTALQNGRQLVLSEG--GRMLLHETKSGISG--------KQSTNGNARPSVAALRTNV 349
            |..:|::. .|..|.|.||...  .::|:...::|::.        ....|...:.|...:|.:.
  Rat   258 EQLQEIIG-RLPGGHQTVLFSATLPKLLVEFARAGLTEPVLIRLDVDSKLNEQLKTSFFLVREDT 321

  Fly   350 NNS-HPKIRMNVLKQKDLPSPAGVAKNKNIRIIS-------LTDF--------KKLYGS-DSTAK 397
            ..: ...:..||::.:|          :|:..::       ||:.        ..:|.: |.||:
  Rat   322 KTAVLLYLLQNVVRPQD----------QNVVFVATKHHAEYLTELLTGQGVSCAHIYSALDQTAR 376

  Fly   398 SLQKIPASLASSGMVRHLPDGTKLVNMRQLQARQLKLP--------------------------- 435
            .:     :||.   ..|....|.:|.  .|.||.|.:|                           
  Rat   377 KI-----NLAK---FTHNKCSTLIVT--DLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARA 431

  Fly   436 -------SLQRPQDLTALEESHSQNEAAVPSPLPSGHPASGSSLR-GQVGTV------------Q 480
                   ||..|.::..|.:.|.....:|....|...|:||:..| |.:|.|            |
  Rat   432 GRSGTAYSLVAPDEVPYLLDLHLFLGRSVTLARPHEEPSSGAVGRDGVLGRVPQSVVDDEDSSLQ 496

  Fly   481 TIQLRPSLSAGSGQGAVNNG--------AAPGKTIVNATKQSPKSP-NVMPLLTS----SEICR- 531
            | .|:.||.....|...||.        .||....:...|:...:. .:.||.:|    .|:.| 
  Rat   497 T-ALQASLELQGLQRVANNAQQQYLRSRPAPSPESIKRAKELDLAELGLHPLFSSCFEEGELQRL 560

  Fly   532 ---------------------------QLHELRRQNEDLRRRADSFQREKEEMLRR---IDRLEQ 566
                                       |:...:||.:  |:...||.:.::|  |:   .|.:.|
  Rat   561 RLVDSIKNYRTRTTIFEINASSKDPSSQMMRAKRQRD--RKAITSFHQGRQE--RQDGPADPVPQ 621

  Fly   567 MVLVQESEADL 577
            ..|.|:.|.|:
  Rat   622 RELPQKEEEDM 632

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Atac3NP_001246531.1 Ank_4 58..106 CDD:290365
ANK repeat 58..83 CDD:293786
ANK 81..204 CDD:238125 18/82 (22%)
ANK repeat 88..116 CDD:293786
Ank_2 90..181 CDD:289560 9/37 (24%)
ANK repeat 118..149 CDD:293786 0/2 (0%)
ANK repeat 151..181 CDD:293786 7/32 (22%)
ANK repeat 184..211 CDD:293786 11/48 (23%)
Ddx54NP_001178477.1 SrmB 69..536 CDD:223587 98/494 (20%)
DEADc 97..299 CDD:238167 43/212 (20%)
HELICc 314..440 CDD:238034 21/145 (14%)
DBP10CT 705..765 CDD:285373
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0337
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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