DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Atac3 and GABPB2

DIOPT Version :9

Sequence 1:NP_001246531.1 Gene:Atac3 / 38055 FlyBaseID:FBgn0052343 Length:583 Species:Drosophila melanogaster
Sequence 2:NP_001310839.1 Gene:GABPB2 / 126626 HGNCID:28441 Length:464 Species:Homo sapiens


Alignment Length:461 Identity:124/461 - (26%)
Similarity:193/461 - (41%) Gaps:105/461 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    52 VDLGKQLLQCARDSDVAGVKAALAHGAPFASDW----------------LGMSALHFAAMNNQLE 100
            |||||:||:.||......|:..:|:||||.:||                ||.|.||.||......
Human     4 VDLGKRLLEAARKGQDDEVRTLMANGAPFTTDWFSKLRVSCGYIGDNCKLGTSPLHLAAQYGHYS 68

  Fly   101 ICEILLQGGINMDGKTKVDRTPLHLACYYGHERIVSLLLALKCSVNSRDMLRMTPLHWAVEKKHK 165
            ..|:||:.|::.|.:|||||||||:|...||..||.||:.....||::|||:||.||||.|:.|:
Human    69 TAEVLLRAGVSRDARTKVDRTPLHMAAADGHAHIVELLVRNGADVNAKDMLKMTALHWATERHHR 133

  Fly   166 GIVRLLLKCQADVTLVSKFGKTPIGLAVYTEQADVLAELEAARQAQASKKLHEESEQQAHKTKKE 230
            .:|.||:|..|||...|||.|:...:|:....|::|..|:.|.|.|.:     .:.::|:.....
Human   134 DVVELLIKYGADVHAFSKFDKSAFDIALEKNNAEILVILQEAMQNQVN-----VNPERANPVTDP 193

  Fly   231 TNEAVSSIMDEPEV------IKTVDDKEMSVEERMDVLENMRGHANVLRNTA------LYILKTH 283
            .:.|...|....||      |.:.:.|..|.:.....::......:||...|      :.:..:|
Human   194 VSMAAPFIFTSGEVVNLASLISSTNTKTTSGDPHASTVQFSNSTTSVLATLAALAEASVPLSNSH 258

  Fly   284 EIADMVQDNDDEDSKEML-NTALQNGRQLVLSEGGRMLLHETKSG-----ISGKQSTNGNARPSV 342
            ...        .:::|:: ..::.:..|.|:..||:.::.....|     |.....|.|..:|.:
Human   259 RAT--------ANTEEIIEGNSVDSSIQQVMGSGGQRVITIVTDGVPLGNIQTSIPTGGIGQPFI 315

  Fly   343 AALRTNVNNSHPKIRMNVLKQKDLPSPAGVAKNKNIRIISLTDFKKLYGSDSTAKSLQKIPASLA 407
            ..::..              |:.|..|||....:.  :|...:.:||        .|.|.|....
Human   316 VTVQDG--------------QQVLTVPAGKVAEET--VIKEEEEEKL--------PLTKKPRIGE 356

  Fly   408 SSGMVRHLPDGTKLVNMRQLQARQ--------------------------LKLPSLQRPQ----D 442
            .:..|....:|    |.|:|..:|                          |||.::.|.|    |
Human   357 KTNSVEESKEG----NERELLQQQLQEANRRAQEYRHQLLKKEQEAEQYRLKLEAIARQQPNGVD 417

  Fly   443 LTALEE 448
            .|.:||
Human   418 FTMVEE 423

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Atac3NP_001246531.1 Ank_4 58..106 CDD:290365 20/63 (32%)
ANK repeat 58..83 CDD:293786 10/24 (42%)
ANK 81..204 CDD:238125 57/138 (41%)
ANK repeat 88..116 CDD:293786 10/27 (37%)
Ank_2 90..181 CDD:289560 45/90 (50%)
ANK repeat 118..149 CDD:293786 16/30 (53%)
ANK repeat 151..181 CDD:293786 16/29 (55%)
ANK repeat 184..211 CDD:293786 8/26 (31%)
GABPB2NP_001310839.1 Ank_4 10..74 CDD:290365 20/63 (32%)
ANK repeat 10..35 CDD:293786 10/24 (42%)
ANK 54..172 CDD:238125 54/117 (46%)
ANK repeat 54..84 CDD:293786 11/29 (38%)
Ank_2 58..148 CDD:289560 45/89 (51%)
ANK repeat 86..117 CDD:293786 16/30 (53%)
ANK repeat 119..148 CDD:293786 16/28 (57%)
ANK repeat 152..185 CDD:293786 9/37 (24%)
GrpE 349..>406 CDD:295646 10/60 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165159327
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1514706at2759
OrthoFinder 1 1.000 - - FOG0002988
OrthoInspector 1 1.000 - - otm42119
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR24193
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5776
SonicParanoid 1 1.000 - - X1982
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
98.940

Return to query results.
Submit another query.