DRSC/TRiP Functional Genomics Resources

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Protein Alignment RhoGEF3 and PEX13

DIOPT Version :9

Sequence 1:NP_612024.4 Gene:RhoGEF3 / 38050 FlyBaseID:FBgn0264707 Length:3519 Species:Drosophila melanogaster
Sequence 2:NP_013292.1 Gene:PEX13 / 850888 SGDID:S000004181 Length:386 Species:Saccharomyces cerevisiae


Alignment Length:474 Identity:99/474 - (20%)
Similarity:161/474 - (33%) Gaps:147/474 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly  2510 AVPGPQ-------LRSLEKSNPSWTFLCSGIASICQPVQQTETDHSTAQEAAEEDIVIRKVKPNK 2567
            |||.|:       |...:::..|.:.:.:......:|.:::...:|.::.|.|  ::.|....|.
Yeast     5 AVPRPKPWETSASLEEPQRNAQSLSAMMTSNQQDSRPTEESNNSNSASESAPE--VLPRPAALNS 67

  Fly  2568 SRRTGRSRSLPSVMLRRLYLAGMPKPGSNEMGTTSDCAASLSQQIKAVSSPTLSEPCLEEQPQKG 2632
            |...|.|.::|.:.....|  |:|. .:|.....|....|:.:.....|             ..|
Yeast    68 SGTYGESNTIPGIYGNSNY--GIPY-DNNPYSMNSIYGNSIGRYGYGGS-------------YYG 116

  Fly  2633 TESTDVANTGSSAGSG-----GLGVLQKFKRTLNNFNNKNQLHISPLSPAAVGNNAPKTKTSPTT 2692
            .........|..||:|     |.|:.:..|.|.       || |..|..|..| .|...:::...
Yeast   117 NNYGSFYGGGYGAGAGYGMNNGSGLGESTKATF-------QL-IESLIGAVTG-FAQMLESTYMA 172

  Fly  2693 TTASIAPMITTTTASDPGSEAGDTSS--GKYRFGPLIWRSSKERRKTKYNRRDKCNSGDSGIQIE 2755
            |..|...||:.      ..:.|:...  |.: ||  |:...|..:|..|    :...|..||   
Yeast   173 THNSFFTMISV------AEQFGNLKEMLGSF-FG--IFAIMKFLKKILY----RATKGRLGI--- 221

  Fly  2756 LEQDEQYSRATMAVSRQDEPRAFALTNGS-------------CGVALSKMRAIRRTNSAK----- 2802
                              .|:.||.:.||             .|...|..:|.||..|.|     
Yeast   222 ------------------PPKNFAESEGSKNKLIEDFQKFNDSGTINSNEKATRRKISWKPLLFF 268

  Fly  2803 ASSILG-PFIVKTKIAKHLNIGESDKAERKAPESLPTRSLSQPNGLESYGMGRPDLEDSDSDSVA 2866
            ..::.| |:::...|.|....|              |...||.||.|.....:  ||        
Yeast   269 LMAVFGFPYLLNKFITKLQTSG--------------TIRASQGNGSEPIDPSK--LE-------- 309

  Fly  2867 SNEEAISFYPTTYAEVLYNFTAGGPQ-ELGLERGMLIEILRKE--VG---PWWFGRIKKEETNLV 2925
                        :|..||:|....|: |:.|::|.|:.||.|:  :|   .||  :::.:..|  
Yeast   310 ------------FARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWW--KVRTKNGN-- 358

  Fly  2926 EDILGPELGWFPKEFVRII 2944
                   :|:.|..::.||
Yeast   359 -------IGYIPYNYIEII 370

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RhoGEF3NP_612024.4 DUF4802 <754..>790 CDD:292678
SH3 2876..2942 CDD:214620 18/71 (25%)
RhoGEF 3031..3235 CDD:279015
PH_Collybistin_ASEF 3240..3373 CDD:269931
PH <3285..3363 CDD:278594
PEX13NP_013292.1 Peroxin-13_N 140..283 CDD:397970 39/185 (21%)
SH3_Pex13p_fungal 310..369 CDD:212705 18/69 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1291
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.030

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