DRSC/TRiP Functional Genomics Resources

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Protein Alignment RhoGEF3 and Prex2

DIOPT Version :10

Sequence 1:NP_612024.4 Gene:RhoGEF3 / 38050 FlyBaseID:FBgn0264707 Length:3519 Species:Drosophila melanogaster
Sequence 2:NP_001380724.1 Gene:Prex2 / 312912 RGDID:1307865 Length:1598 Species:Rattus norvegicus


Alignment Length:383 Identity:98/383 - (25%)
Similarity:175/383 - (45%) Gaps:75/383 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly  3022 DHSTIIRRSAVRELLDTEVNYVKLLAAICDGYLPAMSK----RID-IFSPNSIRLIFSNITAIYK 3081
            |....:|...:.||..||.:||..|..:...:|..|::    ::| ..:..:::::||||..|..
  Rat    10 DKQLRLRVCVLSELQKTERDYVGTLEFLVSAFLHRMNQCAAAKLDKNVTEETVKMLFSNIEEILA 74

  Fly  3082 FQRKFLEALRRGIE-----QNQVAKVFLKMHKGFLCYSTYCNAYPRA---LIELETYDRVKDART 3138
            ..::||:.:...:.     |.:|...||.....|..|..||:.:.:|   |:||   ::::..||
  Rat    75 VHKEFLKVVEECLHPEPNAQQEVGTCFLNFKDKFRIYDEYCSNHEKAQKLLLEL---NKIRTIRT 136

  Fly  3139 ILENCR--ESQNLAELPLSAHLLAPVQRICRYPLHLNEIIKSALEKGAKEGNDTDGAKSAGKTTD 3201
            .|.||.  ..:...::||..:|:.|:||||:|||.|.|::|                ::..|.:|
  Rat   137 FLLNCMLLGGRKNTDVPLEGYLVTPIQRICKYPLLLKELLK----------------RTPRKHSD 185

  Fly  3202 YEQLDVTELDIPDSQDTVNLALEAMRGITEAVNEGKRHS---ETIARHQASFQNFKGPPL----- 3258
            |              ..|..||:||:.:...:||.||..   |.:...||..:.::|..:     
  Rat   186 Y--------------TAVMEALQAMKAVCSNINEAKRQMEKLEVLEEWQAHIEGWEGSNITDTCT 236

  Fly  3259 HLHSARFFLQVDATRQKQNLWNSSYTLFLFDNQLVYCKRD--IIKRS-------HFIYKGRIFLD 3314
            .:......:::.:...::.::      |||||.||||||.  .:|.|       .::::|||..:
  Rat   237 EMLMCGVLMKISSGNIQERVF------FLFDNLLVYCKRKHRRLKNSKASTDGHRYVFRGRINTE 295

  Fly  3315 RCRVVNVRDG----KMFGHTIKNSLRIYSESRDKWYDFSFRSANRKHRFLSTLALERQ 3368
            ...|.||.||    ...||.:.|..:|::.:::||:....:|...||.:...:..||:
  Rat   296 VMEVENVDDGTADFHSSGHIVVNGWKIHNTAKNKWFVCMAKSPEEKHEWFEAILKERE 353

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RhoGEF3NP_612024.4 SH3 2876..2942 CDD:214620
RhoGEF 3028..3234 CDD:238091 57/220 (26%)
PH_Collybistin_ASEF 3240..3373 CDD:269931 36/150 (24%)
Prex2NP_001380724.1 RhoGEF 19..204 CDD:459876 56/217 (26%)
PH_Collybistin_ASEF 210..356 CDD:269931 36/150 (24%)
DEP_1_P-Rex 374..454 CDD:239886
DEP_2_P-Rex 466..558 CDD:239887
PDZ_canonical 587..>636 CDD:483948
PDZ_RGS12-like 668..743 CDD:467194
Blue background indicates that the domain is not in the aligned region.

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