DRSC/TRiP Functional Genomics Resources

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Protein Alignment RhoGEF3 and Arhgef38

DIOPT Version :10

Sequence 1:NP_612024.4 Gene:RhoGEF3 / 38050 FlyBaseID:FBgn0264707 Length:3519 Species:Drosophila melanogaster
Sequence 2:NP_001414563.1 Gene:Arhgef38 / 295449 RGDID:1311728 Length:770 Species:Rattus norvegicus


Alignment Length:510 Identity:107/510 - (20%)
Similarity:192/510 - (37%) Gaps:149/510 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly  2991 TVTTDQSNVT-----LIVIESPPTPSAPSVDFVAQPDHSTIIRRS-------------------- 3030
            |:.:.:.|:|     |.::|...|.:.  ||.....|||..:|||                    
  Rat    11 TMGSKRKNLTFLRSRLYMLERRKTDTV--VDSSVSGDHSGSLRRSQSDRTEYNQKLQEKMTPQAE 73

  Fly  3031 ------------------------AVRELLDTEVNYV-KLLAAICDGYLPAMSKRIDIFSPNSIR 3070
                                    .:|||:.||.:|: .|...:.:...|..||:||.....|  
  Rat    74 CSSAETPTPEEEQQVGRMMAKRAKIIRELIQTERDYLTDLELCVREVVQPLRSKQIDRLDVES-- 136

  Fly  3071 LIFSNITAIYKFQRKFLEALRRGIEQNQ-----VAKVFLKMHKGFL--CYSTYCNAYPRALIELE 3128
             :||||.::::...|.|..|.......:     :.:|||:: ||.|  .|..||..:..|...||
  Rat   137 -LFSNIESVHQISAKLLSLLEEATTDVEPAVQVIGEVFLQI-KGPLEDVYKIYCYHHDEAHSVLE 199

  Fly  3129 TYDRVKDARTILENCRES----------QNLAELPLSAHLLAPVQRICRYPLHLNEIIKSALEKG 3183
            :|::.:|.:..|.:|.:|          .||  |.:.:.::.|:||:.:|||.|.|:..|     
  Rat   200 SYEKEEDLKQHLSHCIQSLKTIYMQEGKPNL--LDMGSLMIKPIQRVMKYPLLLCELRNS----- 257

  Fly  3184 AKEGNDTDGAKSAGKTTDYEQLDVTELDIPDSQDTVNLALEAMRGITEAVNEGKRHSETIARHQA 3248
                       :.....||..|:.              |..|::.|...:||.||..:.:.:::.
  Rat   258 -----------TPPSHPDYRALEE--------------AFAAVKDINVNINELKRRKDLVLKYKK 297

  Fly  3249 SFQ----NFKGPPLHLHS-----------ARFFLQVDATRQKQNLWNSSYTLF-LFDNQLVYCKR 3297
            :.:    ..|...|::||           .:...:.| ::.|.|.:|....|| ..:..:..|.:
  Rat   298 NEEEESLKDKLSRLNIHSISKKSKRVTNHLKILTRGD-SQVKDNTFNREEKLFRSLEKTVRLCVK 361

  Fly  3298 DIIKRSHFIYKGRIF-----LDRCRVVNVRDGKMFGHTIKNSLRIYSESRDKWYDFSFRSANRKH 3357
            :|......|.:...|     ...|. ::.:||:      ||.:...|::.:..:||:.||.....
  Rat   362 NISSCLQHIEEAVPFTLHSVAALCE-ISYKDGE------KNCMEPQSQASNPCHDFAARSQRLIL 419

  Fly  3358 RFLSTLALERQFGGKALYVSEMTGFEYNYEE-------RPGDYSDQSDYDAQDFE 3405
            ..||||.        :|:.......:..|::       .|...:.:||...:::|
  Rat   420 SPLSTLL--------SLFPGPQKLIQKRYDKLLDCNSSLPRSATTESDLAKREYE 466

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RhoGEF3NP_612024.4 SH3 2876..2942 CDD:214620
RhoGEF 3028..3234 CDD:238091 58/267 (22%)
PH_Collybistin_ASEF 3240..3373 CDD:269931 28/153 (18%)
Arhgef38NP_001414563.1 None
Blue background indicates that the domain is not in the aligned region.

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