DRSC/TRiP Functional Genomics Resources

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Protein Alignment ttm2 and TIM50

DIOPT Version :9

Sequence 1:NP_612023.1 Gene:ttm2 / 38049 FlyBaseID:FBgn0035124 Length:409 Species:Drosophila melanogaster
Sequence 2:NP_015262.1 Gene:TIM50 / 856042 SGDID:S000005984 Length:476 Species:Saccharomyces cerevisiae


Alignment Length:368 Identity:108/368 - (29%)
Similarity:177/368 - (48%) Gaps:42/368 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    54 RCSCFGLRV--NLSNASVVYVGHRR----YSTYEKTSTQ------ILT--KLF------------ 92
            |.:...|||  :.:|........||    ||::.:..|:      |||  .||            
Yeast    10 RLNSRALRVVPSAANTLTSVQASRRLLTSYSSFLQKETKDDKPKSILTDDMLFKAGVDVDEKGQG 74

  Fly    93 --PQTSEESNDEESRERRKLEEEEEQKELERAFRRMKLG--FGLFGIGSMLFSFWAIYFY--GRP 151
              .:||.|..::::....|.|:...:::.....:|.|..  |.:|.:.::..:  |||..  ..|
Yeast    75 KNEETSGEGGEDKNEPSSKSEKSRRKRQTSTDIKREKYANWFYIFSLSALTGT--AIYMARDWEP 137

  Fly   152 SLDEHGNEVIDEFSCLPQMQQLMWRTWKS-VNRFQRFFKEPSRKKLLPDPLQPPYVQPPYTLVLE 215
            ...|...:.||....|    .||::.:|: .|....:|:||....|||.|..||| |.|.|||:.
Yeast   138 QESEELKKDIDNGYTL----SLMYKRFKARFNSMFTYFQEPPFPDLLPPPPPPPY-QRPLTLVIT 197

  Fly   216 IKDVLVHPDWTYETGWRFKKRPGVDVFLKECAKYFEIVVYTAEQGVTVFPLVDALDP-NGCIMYR 279
            ::|.|||.:|:.:.|||..||||.|.||...::|:|||::::...:....:.:.||| :..:.|.
Yeast   198 LEDFLVHSEWSQKHGWRTAKRPGADYFLGYLSQYYEIVLFSSNYMMYSDKIAEKLDPIHAFVSYN 262

  Fly   280 LVRDSTHFDGGHHVKNLDNLNRDLKRVVVVDWDRNSTKFHPSNSFSIPRWSGNDNDTTLFELTSF 344
            |.::...:..|.|:|:|..|||||.:|:::|.|.||.|..|.|:..:..|:| :.|..|..|..|
Yeast   263 LFKEHCVYKDGVHIKDLSKLNRDLSKVIIIDTDPNSYKLQPENAIPMEPWNG-EADDKLVRLIPF 326

  Fly   345 LSVLGTSEIDDVREVLQYYNQFSDSLSQFRENQRKLGELMHAE 387
            |..|.|.:..|||.:|..:....:...:|....:||.:..:.:
Yeast   327 LEYLATQQTKDVRPILNSFEDKKNLAEEFDHRVKKLKDKFYGD 369

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ttm2NP_612023.1 CPDc 208..336 CDD:214729 47/128 (37%)
TIM50NP_015262.1 FCP1 1..354 CDD:227517 105/351 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 124 1.000 Domainoid score I1200
eggNOG 1 0.900 - - E1_COG5190
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 156 1.000 Inparanoid score I1077
Isobase 1 0.950 - 0.917438 Normalized mean entropy S1903
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0003614
OrthoInspector 1 1.000 - - otm46699
orthoMCL 1 0.900 - - OOG6_102279
Panther 1 1.100 - - O PTHR12210
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1522
SonicParanoid 1 1.000 - - X2489
TreeFam 1 0.960 - -
1312.800

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