DRSC/TRiP Functional Genomics Resources

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Protein Alignment ttm2 and timm50

DIOPT Version :9

Sequence 1:NP_612023.1 Gene:ttm2 / 38049 FlyBaseID:FBgn0035124 Length:409 Species:Drosophila melanogaster
Sequence 2:NP_956959.1 Gene:timm50 / 393638 ZFINID:ZDB-GENE-040426-1618 Length:387 Species:Danio rerio


Alignment Length:374 Identity:136/374 - (36%)
Similarity:210/374 - (56%) Gaps:56/374 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 TSRSLTSGLRRALVKQPRKGGDVGKPGMELGRCSCFGLRVNLSNASVVYVGHRRYSTYEKTSTQI 87
            :|.|.|.||.:|::::                                     |....:|:..|.
Zfish    44 SSSSATGGLAQAILQE-------------------------------------RLQQQQKSQEQP 71

  Fly    88 LTKLFPQTSEESNDEESRERRKLEEEEEQKELERAFRRMKLGF-GLFGIGSMLFSFWAIYFYGRP 151
                 |...|:|..::..:    .|:::|||.....::|.|.. |:.|:|.   :...:|.:|..
Zfish    72 -----PPEGEDSGHKQDEQ----GEDKKQKENTAYAKKMVLRLAGIMGLGG---TVGIVYIFGSN 124

  Fly   152 SLDEHGNEVIDEF-SCLPQMQQLMWRTWKSVNRFQRFFKEPSRKKLLPDPLQPPYVQPPYTLVLE 215
            |:||.||::.||| :.:|.:|||. ||:|....:::...||:..|||||||:.||.|||||||||
Zfish   125 SVDEQGNKIPDEFDNDVPVIQQLR-RTFKYFKDYRQMIIEPTSPKLLPDPLREPYYQPPYTLVLE 188

  Fly   216 IKDVLVHPDWTYETGWRFKKRPGVDVFLKECAKYFEIVVYTAEQGVTVFPLVDALDPNGCIMYRL 280
            :.|||:||:|:..||||||||||:|...::.|..:|||::|:|.|:|.:||:|::||.|.:||||
Zfish   189 LTDVLLHPEWSLATGWRFKKRPGIDYLFQQLAPLYEIVIFTSETGMTAYPLIDSIDPQGFVMYRL 253

  Fly   281 VRDSTHFDGGHHVKNLDNLNRDLKRVVVVDWDRNSTKFHPSNSFSIPRWSGNDNDTTLFELTSFL 345
            .||:|.:..|||||::..||||..:|:|||..|.:....|.|..::.:|.||..|.||::|.:||
Zfish   254 FRDATRYMEGHHVKDVSCLNRDTSKVIVVDCKREAFGLQPFNGLALCKWDGNSEDRTLYDLAAFL 318

  Fly   346 SVLGTSEIDDVREVLQYYNQFSDSLSQFRENQRKLGELMHAEEVEKTSK 394
            ..:.||.::|||.||:.|....|.:..|:..|.:|..    ||.::.|:
Zfish   319 KTIATSGVEDVRSVLENYAHEEDPIEAFKRRQAQLAR----EEEQRISE 363

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ttm2NP_612023.1 CPDc 208..336 CDD:214729 65/127 (51%)
timm50NP_956959.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 61..93 7/40 (18%)
NIF 183..330 CDD:281081 72/146 (49%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170589341
Domainoid 1 1.000 183 1.000 Domainoid score I3366
eggNOG 1 0.900 - - E1_COG5190
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 275 1.000 Inparanoid score I2930
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1142452at2759
OrthoFinder 1 1.000 - - FOG0003614
OrthoInspector 1 1.000 - - otm26612
orthoMCL 1 0.900 - - OOG6_102279
Panther 1 1.100 - - O PTHR12210
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1522
SonicParanoid 1 1.000 - - X2489
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1413.790

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