DRSC/TRiP Functional Genomics Resources

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Protein Alignment ttm2 and Ctdspl2

DIOPT Version :9

Sequence 1:NP_612023.1 Gene:ttm2 / 38049 FlyBaseID:FBgn0035124 Length:409 Species:Drosophila melanogaster
Sequence 2:XP_038960896.1 Gene:Ctdspl2 / 311368 RGDID:1309219 Length:478 Species:Rattus norvegicus


Alignment Length:218 Identity:59/218 - (27%)
Similarity:99/218 - (45%) Gaps:39/218 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   159 EVIDEFSCLPQMQQLMWRTWKSVNRFQRFFKEPSRKKLLPDPLQPPYVQPPYTLVLEIKDVLVH- 222
            ||.|.:..:..:..|   |.:.:|          ||..||...:.   .|.::|||::.:.||| 
  Rat   265 EVFDPYYFIKHVPPL---TEEQLN----------RKPALPLKTRS---TPEFSLVLDLDETLVHC 313

  Fly   223 ----------------PDWTYETGWRFKKRPGVDVFLKECAKYFEIVVYTAEQGVTVFPLVDALD 271
                            .|..|:...|.  ||....||:..::.:||:::||.:.|....|::.||
  Rat   314 SLNELEDAALTFPVLFQDVIYQVYVRL--RPFFREFLERMSQMYEIILFTASKKVYADKLLNILD 376

  Fly   272 P-NGCIMYRLVRDSTHFDGGHHVKNLDNLNRDLKRVVVVDWDRNSTKFHPSNSFSIPRWSGNDND 335
            | ...:.:||.|:......|:::|:|:.|.|||.:.:::|....:..:..||...|..|..:.||
  Rat   377 PKKQLVRHRLFREHCVCVQGNYIKDLNILGRDLSKTIIIDNSPQAFAYQLSNGIPIESWFMDKND 441

  Fly   336 TTLFELTSFLSVLGTSEI-DDVR 357
            ..|.:|..||..|  .|: :|||
  Rat   442 NELLKLIPFLEKL--VELNEDVR 462

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ttm2NP_612023.1 CPDc 208..336 CDD:214729 39/145 (27%)
Ctdspl2XP_038960896.1 HIF-SF_euk 299..460 CDD:274055 45/164 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5190
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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