DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tudor-SN and Rnf17

DIOPT Version :9

Sequence 1:NP_001261195.1 Gene:Tudor-SN / 38045 FlyBaseID:FBgn0035121 Length:926 Species:Drosophila melanogaster
Sequence 2:XP_038949233.1 Gene:Rnf17 / 305908 RGDID:1310486 Length:1650 Species:Rattus norvegicus


Alignment Length:1003 Identity:183/1003 - (18%)
Similarity:328/1003 - (32%) Gaps:359/1003 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 PAPTKSLSGIVKQV--LSGDTVVIRATKGAPPPEKQITFSHVLAPK---------------LARR 66
            |:|.:.:|..:..:  ||.:::...:.:.....|..::..:||:|:               |..:
  Rat   907 PSPEEIISSEINSLSPLSVNSLANESFQSLYNKELPVSICNVLSPEKIYVQWLLTENLLTSLEEK 971

  Fly    67 PGAGGDETKDEPWAWESREFLRKKLIGVEVTFTFDKPANSNREYG-FVWIGKDK-------ETGE 123
            ..|..:.::.:|..||.......|:           ||.|....| .:.:..|.       :.|.
  Rat   972 MVAAYEHSEWKPVKWECDMHCAVKI-----------PAKSQWRRGQIIRMVTDTLVEVLLYDVGI 1025

  Fly   124 NVVESI--VREGLVSVRREGRPTAEQQTLIELEDQARAAGRGKWSPTASAADKVRNIKWSHENPA 186
            .:|.:|  :||...:::..||.:.|    ..|.|.....|..||  ||:|.|             
  Rat  1026 ELVVNIHCLRELQENLKTMGRLSLE----CSLVDIRPTGGSDKW--TATACD------------- 1071

  Fly   187 HLVDIYGGNPVKAIIEHVRDGSTVRAFLLPDFHYITLMISGIRCPGVKL---DADGKPDLSVKVP 248
             .:.:|....:..||  :::.||  .:.||                ||:   |..|:.       
  Rat  1072 -CLSLYLTGAIATII--LQENST--TWPLP----------------VKIFCRDEKGER------- 1108

  Fly   249 FADEARYYVETRLLQRDVEIRLESVNNSNFIGTILYPKGNIAESLLREG---LAKCVDWSMAVMK 310
             .|.::|.::..|..||..:...|.::|        |:.:: |..|.:|   :.||...:....|
  Rat  1109 -VDVSKYLIKKGLALRDRRVSKSSNSHS--------PEKSL-EIPLEQGDSVVTKCFQINFDTNK 1163

  Fly   311 TGTDKLRAAERFAKEKRLRQWQDYQAKTPAFNSKEKDFSGTVVEVFNGDAINVRLSNGQVKKVFF 375
            ...||:.                 :.|.|  .||||              .:...:||     |:
  Rat  1164 KIADKVN-----------------EHKVP--ESKEK--------------YSESRTNG-----FY 1190

  Fly   376 SSIRPPRDQR--------AVVGTDGEEIVKAPPRGKNYRPLYEIPHMFDAREFLRKKLINKKVQC 432
               :||....        :.:|.||              .::.:|.:   .||...|::: ::|.
  Rat  1191 ---KPPAVPNTSSFEAIVSCIGDDG--------------TIFVVPKL---SEFELIKMMD-EIQS 1234

  Fly   433 NLDYISPPRENFPEKYCYTVSIGGQNVAEAMVAKGLATCVRYRQDDDQRSSAYDQLIAAEQQAIK 497
            ||..:......|.:|                                           .|..|::
  Rat  1235 NLKCLGLLEPYFWKK-------------------------------------------GEPCAVR 1256

  Fly   498 GLKGLHAKKDNATLRVNDLTVDHSRIKVQYLPSWQRALRTEAIVEFVASGSRLRIFVPKDS---C 559
            |       .|....|...:.|....|:||||        .....|.:.......|.:..|:   |
  Rat  1257 G-------SDTLWYRGKVMEVVGGTIRVQYL--------DHGFTEKIPQCHLYPILLYPDTPQFC 1306

  Fly   560 LVTFLLAGISCPRSSRPALNGVPAQEGEPFGDEALTFTRERVLQRDVSVHI-DTTDKAGSSVIGW 623
            :...|...:.|     ..:.....|.|..:..:|:...:|.:.:|:|.:|| :..|..       
  Rat  1307 IPCQLYQTLPC-----VCVCVHYTQVGNVWQPDAIELLQELLSKREVDIHIMELPDHP------- 1359

  Fly   624 LWTDSGANLSVALVEEGLAEVHFSAEKSEYYRQLKIAEDRAKAAKKNIWTNYVEEVPKEKTVTEE 688
             |    ..|||.|..:|::..:|.|     |.:..|.|             :.||:.|||...:.
  Rat  1360 -W----GKLSVHLYFDGMSLSYFMA-----YHKYCIFE-------------HTEEIFKEKPRGQN 1401

  Fly   689 EK-EDKVVAERKVNYENVIVTEI-----------------------------TETLTFFAQSVES 723
            :| ||:   ..|:.:|::::.|:                             .:.:.....||||
  Rat  1402 KKYEDE---NWKIRFEDLLLPEMEAPILPPYLSSLLPPPEELYAVQVKHIVSPDEVYICLDSVES 1463

  Fly   724 --------------------GSKLESLMSKLHADFQSNPPIAGSYTPKRGDLVAAQFTLDNQWYR 768
                                ...||..:.:|:.:.::.||:    |....::.......|..|||
  Rat  1464 CTQLNNHGDTDDSGVSWEPESESLEEALQRLNKNVETFPPL----TDFSSEMPCLAEYADGLWYR 1524

  Fly   769 AKVERVQGSN---ATVLYIDYGNKETLPTNRLAALPPAFSSEKPYATEYALALVALPTDNEDKEE 830
            ||:..::..|   ..||::|||:.|.|..|||..:|.........|.:..||....|..:..|  
  Rat  1525 AKIVSIKEFNPLSVLVLFVDYGSTEKLTINRLRQIPIQLMQYPAQAIKVLLAGFKPPLSDSGK-- 1587

  Fly   831 ALRAFSEDVLNHKVQLNVELKVTGSPNLATLRDPTTKVDF--GKQLVAEGLVLAEQRGERKLKEL 893
                               .::...|.. ::....|.:|.  ||||.|..:..|.:       ::
  Rat  1588 -------------------TRIPYCPRW-SMEALWTMIDCLQGKQLYASSVAQAPE-------QI 1625

  Fly   894 VDQYKAAQEAARVAHLAIWKYGDITQDD 921
            |..|:..|..   .|:::.:.|...:|:
  Rat  1626 VTLYEDEQYP---VHMSLVEMGLADKDE 1650

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tudor-SNNP_001261195.1 SNc 23..166 CDD:214615 30/169 (18%)
SNc 195..333 CDD:214615 26/143 (18%)
SNc 346..504 CDD:320778 21/165 (13%)
SNc 538..672 CDD:214615 26/137 (19%)
TUDOR 697..817 CDD:306940 32/171 (19%)
SNc 767..914 CDD:320778 34/151 (23%)
Rnf17XP_038949233.1 PHD_SF 30..72 CDD:419867
BBC 137..>242 CDD:128778
Tudor_TDRD4_rpt1 490..566 CDD:410485
Tudor_TDRD4_rpt2 728..823 CDD:410486
Tudor_TDRD4_rpt3 968..1049 CDD:410487 18/91 (20%)
Tudor_TDRD4_rpt4 1247..1314 CDD:410488 17/124 (14%)
Tudor_TDRD4_rpt5 1504..1608 CDD:410489 27/129 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1525
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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