DRSC/TRiP Functional Genomics Resources

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Protein Alignment rno and ATX1

DIOPT Version :9

Sequence 1:NP_001246528.1 Gene:rno / 38027 FlyBaseID:FBgn0035106 Length:3241 Species:Drosophila melanogaster
Sequence 2:NP_850170.1 Gene:ATX1 / 817721 AraportID:AT2G31650 Length:1062 Species:Arabidopsis thaliana


Alignment Length:563 Identity:131/563 - (23%)
Similarity:212/563 - (37%) Gaps:157/563 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   124 WQARSVADIKMSSIYNRSSTEAPAELYRKDLISAMKLPDSEPLANYEYLIVTDPWKQE------- 181
            |.....|..|.:|:.:.|:    :.||:.::     |.|:|...:..:::..|..:|.       
plant   471 WPEGYTAMRKFTSLTDHSA----SALYKMEV-----LRDAETKTHPLFIVTADSGEQFKGPTPSA 526

  Fly   182 -WEK---GVQVPVNPDSLPEPCVYVLPEPVVSPAHD-FKLPKNRYLRITKDEHYS-PDLHYLTNV 240
             |.|   .::...|.|| |.    :|.|.:.....| |.|.....:::.:|...| |..|     
plant   527 CWNKIYNRIKKVQNSDS-PN----ILGEELNGSGTDMFGLSNPEVIKLVQDLSKSRPSSH----- 581

  Fly   241 VALAENTCAYDIDPIDEAWLRLYNSDRAQCGAFPINATQFERVIEELEVRCWEQIQVILKLEEGL 305
            |::.:|:              |........|..|:...             |:.:..        
plant   582 VSMCKNS--------------LGRHQNQPTGYRPVRVD-------------WKDLDK-------- 611

  Fly   306 GIEFDENVICDVCRSPDSEEANEMVFCDNCNICVHQACYG-ITAIPSGQWLCRTCSMG---IKPD 366
                     |:||...:..|.|..:.||.|.:.||..||| :.......|||..|..|   :.|.
plant   612 ---------CNVCHMDEEYENNLFLQCDKCRMMVHAKCYGELEPCDGALWLCNLCRPGAPDMPPR 667

  Fly   367 CVLCPNKGGAMKSNKSGKHWAHVSCALWIPEVSIGCVDRMEPITKISSIPQSRWSLICVLCRKRV 431
            |.|||..|||||....|: |||::||:||||..:..|.:||||..::.:.:.||.|:|.:|....
plant   668 CCLCPVVGGAMKPTTDGR-WAHLACAIWIPETCLSDVKKMEPIDGVNKVSKDRWKLMCTICGVSY 731

  Fly   432 GSCIQCSVKPCKTAYHVTCAFQHG----LEMRAIIEEGNAEDGVKLRSYCQKHSMSKGKKENAGS 492
            |:|||||...|:.|||..||...|    ||....:|...|:..:::.|:|::|      ::.:.:
plant   732 GACIQCSNNSCRVAYHPLCARAAGLCVELENDMSVEGEEADQCIRMLSFCKRH------RQTSTA 790

  Fly   493 HGGGSASVASAMQKANRY---GSGAGGGADDGNNACGTTGEDPRRRKNHRKTELTSEER----NQ 550
            ..|....:.||..|.:.|   .:.:|....:..|..|..|     ||........|.:|    ||
plant   791 CLGSEDRIKSATHKTSEYLPPPNPSGCARTEPYNCFGRRG-----RKEPEALAAASSKRLFVENQ 850

  Fly   551 ---------------------------------ARAQRLQEVEAEFDKHVNFNDISCHLFDVDDD 582
                                             :.|::.:.:...:.|.:.|.....|.|.:   
plant   851 PYVIGGYSRLEFSTYKSIHGSKVSQMNTPSNILSMAEKYRYMRETYRKRLAFGKSGIHGFGI--- 912

  Fly   583 AIVAIYNYWKLKRKS-----RHNRELIPPKSEDVEMIARKQEQ 620
                   :.||..::     .:..||:.|.      ||.|:||
plant   913 -------FAKLPHRAGDMMIEYTGELVRPS------IADKREQ 942

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rnoNP_001246528.1 COG5141 250..>664 CDD:227470 102/424 (24%)
EPL1 <250..288 CDD:287484 3/37 (8%)
PHD_JADE 314..359 CDD:277048 16/45 (36%)
ePHD_RNO 367..480 CDD:277177 48/116 (41%)
TFIIA 2138..>2295 CDD:281188
ATX1NP_850170.1 TUDOR <215..248 CDD:295375
PWWP 299..389 CDD:279227
FYRN 448..497 CDD:283589 7/29 (24%)
FYRC 508..597 CDD:295414 20/112 (18%)
PHD_ATX1_2_like 611..657 CDD:276969 16/62 (26%)
ePHD_ATX1_2_like 668..784 CDD:277132 48/116 (41%)
SET 898..1017 CDD:214614 14/61 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 110 1.000 Domainoid score I2106
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR13793
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.010

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