DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rno and phf-14

DIOPT Version :9

Sequence 1:NP_001246528.1 Gene:rno / 38027 FlyBaseID:FBgn0035106 Length:3241 Species:Drosophila melanogaster
Sequence 2:NP_507508.2 Gene:phf-14 / 180169 WormBaseID:WBGene00013339 Length:599 Species:Caenorhabditis elegans


Alignment Length:600 Identity:133/600 - (22%)
Similarity:210/600 - (35%) Gaps:154/600 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   276 NATQFERVIEELEVRCWEQIQVILKLEEGLGIEFDENVICDVC-RSPDSEEANEMVFCDNCNICV 339
            |:.:.|...||.:....|..:...|.|.....|.|. |||.|| ...:...|.:.:.|..|.|.|
 Worm    70 NSDEEESEDEENDEEEAESAESSEKPERTPSAEKDA-VICGVCINQRNIVAAGDFLQCQKCGINV 133

  Fly   340 HQACYGITAIPSG----QWLCRTCSMG--IKPDCVLCPNKGGAMKSNKSGKHWAHVSCALWIPEV 398
            |::|||  .:|.|    .|.|..|..|  :.|.|..||::.||.|.......|||..|||:...|
 Worm   134 HESCYG--TLPGGSDDASWYCEPCLYGLTLPPHCEFCPSRFGAFKRADIRGRWAHAICALYTHGV 196

  Fly   399 SIG-----CVDRMEPITKISSIPQSRWSLICVLC----RKRVGSCIQCSVKPCKTAYHVTCAFQH 454
            :..     |....|.:...:...:.    .|..|    ..|.|...:|....||...|||||.:.
 Worm   197 NYAQTHTRCGVSWEHLDNNAHFGRR----TCTACTDKIEARFGIASRCESGMCKEYLHVTCAQKL 257

  Fly   455 GLEMRAIIEE---GNAEDGVKLRSYCQKHSMSKGKKENAGSHGGGSASVASAMQKANRYGSGAGG 516
            ||    :::|   .:.|..|....:|:||:.....|...........|.|..:....|..||   
 Worm   258 GL----LVDETDDNDTEIAVMRYFFCKKHTNRDNLKPYQRKFDDWEKSEARRITVNRRLRSG--- 315

  Fly   517 GADDGNNACGTTGEDPRRRKNHRKTELTSEERNQARAQRLQEVEAEFD---KHVNFNDISCHLFD 578
                            ...||.:|      |..:.|.:..:|::...:   |:....|||..  :
 Worm   316 ----------------ELEKNEQK------EHKELRVKMREEIDKVIEEECKNKPKGDISAG--E 356

  Fly   579 VDDDAIVAIYNYWKLKRKSRHNRELIPPKSEDVEMIARKQEQQDMENHKL-------VVHLRQ-- 634
            ....|        :|...|....:....|:|:.. ::||:.:....|.||       :...::  
 Worm   357 KPKQA--------RLLNSSAEFFDRFETKAEEAG-LSRKEFRDPFFNIKLNSGSHVPIGFSKEYI 412

  Fly   635 DLERVRNLCYMVSRREKLSRSLFKLREQVFYKQLGVLDEMRLEKQQTKQEQQQPVMDLNAVIYAN 699
            |..::|:...:....|||.:|    ||        :|.|.: ..|:.|..|:..|...:|     
 Worm   413 DFMQIRDSQIIPEEEEKLRKS----RE--------LLAETK-ANQEKKSSQKHLVERFSA----- 459

  Fly   700 DGPTLYDRFYSSVGGQTVPAQYQDLKYILEQLMGKLQSG--------KQGRGRAS---------- 746
             ...|.::..:|:         :.|..:|.:|.|  .||        :|...|:|          
 Worm   460 -NEELIEQKLTSI---------EKLHQLLTELGG--DSGLLLSDFNNRQSCSRSSPAIIAPKKMN 512

  Fly   747 -------QSPNKRKQPAKASPNKKLNNGILS-------------------SRTSSPEKTVAGSKV 785
                   :|..:.||......:|..:.|.||                   :.:|..|:.:.....
 Worm   513 YTCVVCRKSTEQHKQTQCDECHKSYHIGCLSPPLTRLPKRNNFGWICHECNESSDSEQEIIPEAS 577

  Fly   786 GTTTSKVRS--PPGK 798
            .:||..|||  ||.:
 Worm   578 ESTTRSVRSRRPPAR 592

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rnoNP_001246528.1 COG5141 250..>664 CDD:227470 99/418 (24%)
EPL1 <250..288 CDD:287484 4/11 (36%)
PHD_JADE 314..359 CDD:277048 17/49 (35%)
ePHD_RNO 367..480 CDD:277177 33/124 (27%)
TFIIA 2138..>2295 CDD:281188
phf-14NP_507508.2 PHD1_PHF14 107..155 CDD:277036 17/49 (35%)
PHD_SF 165..282 CDD:304600 33/124 (27%)
PHD_SF 515..562 CDD:304600 7/46 (15%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5141
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D566217at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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