DRSC/TRiP Functional Genomics Resources

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Protein Alignment rno and XB5817984

DIOPT Version :9

Sequence 1:NP_001246528.1 Gene:rno / 38027 FlyBaseID:FBgn0035106 Length:3241 Species:Drosophila melanogaster
Sequence 2:XP_002937272.2 Gene:XB5817984 / 100485989 XenbaseID:XB-GENE-5817985 Length:363 Species:Xenopus tropicalis


Alignment Length:28 Identity:9/28 - (32%)
Similarity:17/28 - (60%) Gaps:0/28 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly  1652 GELPMDIDEELTTAPTRTQLSASASKLA 1679
            |:.|:..|||.:.:.:....|.|:|::|
 Frog   334 GKNPLGDDEETSVSGSTQVSSVSSSQVA 361

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rnoNP_001246528.1 COG5141 250..>664 CDD:227470
EPL1 <250..288 CDD:287484
PHD_JADE 314..359 CDD:277048
ePHD_RNO 367..480 CDD:277177
TFIIA 2138..>2295 CDD:281188
XB5817984XP_002937272.2 7tm_4 55..333 CDD:304433
7tm_1 65..316 CDD:278431
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1726
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.940

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