DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Vdup1 and CG18747

DIOPT Version :10

Sequence 1:NP_612004.2 Gene:Vdup1 / 38023 FlyBaseID:FBgn0035103 Length:342 Species:Drosophila melanogaster
Sequence 2:NP_652650.2 Gene:CG18747 / 59143 FlyBaseID:FBgn0042104 Length:418 Species:Drosophila melanogaster


Alignment Length:343 Identity:86/343 - (25%)
Similarity:145/343 - (42%) Gaps:32/343 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 IIFDNTSL-LYFPGQFLSGRVLIELQDETPALGLHFHVVGEGVVRNGRR---QERTY-DKENYID 69
            |.|||... .::.||.:.|...::.........:...|||..:.:...:   ..:.| .:|:|:.
  Fly     7 ISFDNNKHGTFYAGQLVKGCATLKCDRSKEVQAVLLKVVGYSITKWSEKSLGSTKLYVGREDYLS 71

  Fly    70 FRMRLLGDVDQGGP------AILSPGIHSFPFKLGLPLGLPSTFLGRYGWIQFYCKAALRENNGI 128
            ....|:|. :|...      ..:..|:||:.|...||...||:|.||:|.|::..|..|......
  Fly    72 SNTYLVGS-EQNNTHNNTHRLTIEAGVHSYNFTCQLPYQCPSSFEGRHGCIRYIVKVLLIRPWKF 135

  Fly   129 IHKNHQVFIVMNPIDLNLEKPILAQPFTCEVEHKLG--VVCVG---GGQIKCRVSLDRGGYVPGE 188
            .....:.|.|:..:|||.:.|.|.     ...|..|  ..|.|   ...:|..:.|.:.|||||:
  Fly   136 DQAYTKGFTVLKMLDLN
FDTPQLK-----SAAHSEGYRTFCCGPCKTDPLKLELHLPQAGYVPGQ 195

  Fly   189 NILVTAFISNYSNVSIKRTKASLTETIEYLARGKVVQTE--KRELAVLVRGKIRPGAKDEWHN-- 249
            .|.||..:.|.:.|::...:.||...:.|.:    |..|  :.|..::.|.|.....|....:  
  Fly   196 KIPVTIVVVNNTAVAVSEIRLSLVMLVRYYS----VSPEHSRVERLIISRAKGESVLKQCTRSQT 256

  Fly   250 -ELYVPPLPPTNLHGCHLIKISYDVFFVIEPKSMEKEIKLQLPIVLATYPFRHSGDAVNANTWPE 313
             :|.||..|||.:...:||:|:|.:......||:.::..:.:|:.:.|.|...||..|.......
  Fly   257 IDLPVPSTPPTCVELSNLIQIAYQLEVEALVKSLREQQLMVMPVTVGTIPLAVSGIVVQQPPRRS 321

  Fly   314 SVLK-PDTHTHYPSTLPI 330
            :..: ||:..:.|..||:
  Fly   322 AHYEGPDSRRNPPDELPM 339

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vdup1NP_612004.2 Arrestin_N 8..145 CDD:451447 34/145 (23%)
Arrestin_C 171..299 CDD:214976 35/132 (27%)
CG18747NP_652650.2 Arrestin_N 5..152 CDD:425619 34/145 (23%)
Arrestin_C 176..307 CDD:214976 35/134 (26%)

Return to query results.
Submit another query.