DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vdup1 and Arrdc1

DIOPT Version :10

Sequence 1:NP_612004.2 Gene:Vdup1 / 38023 FlyBaseID:FBgn0035103 Length:342 Species:Drosophila melanogaster
Sequence 2:XP_038961503.1 Gene:Arrdc1 / 366001 RGDID:1309961 Length:460 Species:Rattus norvegicus


Alignment Length:415 Identity:96/415 - (23%)
Similarity:154/415 - (37%) Gaps:102/415 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 FLIIFDNTSLLYFPGQFLSGRVLIELQDETPALGLHFHVVGEGVVRNGRRQERTYDKENYIDFRM 72
            |.|......::|.||:.|:|.|.:.|....|...:....:|...|.|.........:|:|.:..:
  Rat     7 FEIRLSQGRVVYSPGEPLAGAVHLRLGAPLPFRAIRVTCMGSCGVSNKANDGAWVVEESYFNSSL 71

  Fly    73 RLLGDVDQGGPAILSPGIHSFPFKLGLPLGLPSTFLGRYGWIQFYCKAALRENNGIIHKNHQ--- 134
            .|   .|:|.   |.||.|:|||:..||...|::|.|.:|.|....:|::  :.....|:|:   
  Rat    72 SL---ADKGS---LPPGEHNFPFQFLLPATAPTSFEGPFGKIVHQVRASI--DTPRFSKDHKCSL 128

  Fly   135 VFIVMNPIDLNLEKPILAQPFTCEVEHKLGVVCVGGGQIKCRVSLDRGGYVPGENILVTAFISNY 199
            ||.:::|::|| ..|.:.||.......|.....|..|.:....|.|..|||.|:.:.:.|.|.|.
  Rat   129 VFYILSPLNLN-SIPDIEQPNVASTTKKFSYKLVKTGSVVLTASTDLRGYVVGQVLRLQADIENQ 192

  Fly   200 SNVSIKRTKASLTETIEYLARGKVVQTEKRELAVLVRGKIRPGAKDEWHNELYVPPLPPTNLHGC 264
            |........|||.:.:.|.|:..:.  :.|.:|.:....::.....:|..::.||.||.:.|.||
  Rat   193 SGKDTSPVVASLLQKVSYKAKRWIY--DVRTIAEVEGTGVKAWRHAQWQEQILVPALPQSALPGC 255

  Fly   265 HLIKISYDV------------------------FFVIEPKSMEKEIKLQL--------------- 290
            .||.|.|.:                        ||.:..|:.|..:.|.|               
  Rat   256 SLIHIDYYLQVWCCPGLGGLRLGGLGLTLQYLRFFQVSMKAPEATVTLPLFVGNIAVNQTPLSPC 320

  Fly   291 -----------PIVLATYPFR---------HSGDAVNANTWPES--------------------- 314
                       |:|.:..|..         |..|.|:.:|...|                     
  Rat   321 PGPGSSPGLLSPVVPSAPPQEEAEAVASGPHFSDPVSLSTKSHSQQQPLSTTLGSVSVTTIEPCV 385

  Fly   315 -VLKPDTHTHYP-------STLPIF 331
             |..|..|:.:|       :|:|.|
  Rat   386 QVGSPARHSLHPPLCISIGATVPYF 410

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vdup1NP_612004.2 Arrestin_N 8..145 CDD:451447 38/139 (27%)
Arrestin_C 171..299 CDD:214976 38/177 (21%)
Arrdc1XP_038961503.1 Arrestin_N 7..139 CDD:451447 38/139 (27%)
Arrestin_C 162..310 CDD:460676 36/149 (24%)
PHA03247 <311..449 CDD:223021 15/100 (15%)

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