DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vdup1 and LOC3290528

DIOPT Version :10

Sequence 1:NP_612004.2 Gene:Vdup1 / 38023 FlyBaseID:FBgn0035103 Length:342 Species:Drosophila melanogaster
Sequence 2:XP_550924.2 Gene:LOC3290528 / 3290528 VectorBaseID:AGAMI1_014466 Length:386 Species:Anopheles gambiae


Alignment Length:349 Identity:81/349 - (23%)
Similarity:141/349 - (40%) Gaps:49/349 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 IIFDNTSL-LYFPGQFLSGRVLIELQDETPALGLHFHVVG------EGVVRN--------GRRQE 59
            |.|||... :|..||.|:|:|.:.|.:....:|:...:.|      ..|:.:        .|:..
Mosquito     8 IRFDNNPYGVYLAGQTLAGQVELRLTEILSVIGISLRLDGLTEIEWSEVIESATGHQPSGSRKTA 72

  Fly    60 RTYDKENYIDFRMRLLGDVDQGGPA-ILSPGIHSFPFKLGLPLGLPSTFLGRYGWIQFYCKAALR 123
            |.:.::..::....|.|  ...||. .|:.|.|::.|...||..||::|.|.:..|::..|.::.
Mosquito    73 RYHGQQTLLNSTSFLCG--SSVGPVRDLAIGTHTYHFSCELPAHLPTSFEGYHARIRYTAKVSVH 135

  Fly   124 ENNGIIHKNHQV-FIVMNPIDLNLEKPILAQPFTCEVEHKLGVVCVG---GGQIKCRVSLDRGGY 184
            .....:....|. |.|:..::||....:|..|...|:..   |.|.|   ...:.....:.|.||
Mosquito   136 RTKARVDPIGQASFTVLRHLNLNEHGEVLLLPAKSELTK---VFCCGPCSSEPLYISAQIARCGY 197

  Fly   185 VPGENILVTAFISNYSNVSIKRTKASLTETIEYLARGKVVQTEKRELAVLVR--GKIRPGAKDEW 247
            :||:.|::.....|.|..::...:..|.:.:.|.::...|:|....|.|...  ..:..|...:.
Mosquito   198 IPGQTIVMKIDAVNRSRTTVTEFRVKLVQKLCYSSQQPAVETRTDALVVAESRCSGVTSGEVVKH 262

  Fly   248 HNELYVPPLPPTNLHGCHLIKISYDVFFVIEPKSMEKEI--KLQLPIVLATYPFRHSGDAVNANT 310
            ...|.:|.:|||...|..|..::|::  .:|.:.....|  :|.:||.:.|....   .||    
Mosquito   263 QQNLLIPAVPPTYTDGAPLFSVNYEL--EVEARVTGPNISPRLAMPITIGTIALE---QAV---- 318

  Fly   311 WPESVLKPDTHTHYPSTLPIFRPW 334
             |:..|||.|..          ||
Mosquito   319 -PKEKLKPLTKP----------PW 331

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vdup1NP_612004.2 Arrestin_N 8..145 CDD:451447 35/151 (23%)
Arrestin_C 171..299 CDD:214976 29/131 (22%)
LOC3290528XP_550924.2 None

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