DRSC/TRiP Functional Genomics Resources

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Protein Alignment p130CAS and Cass4

DIOPT Version :9

Sequence 1:NP_001097456.2 Gene:p130CAS / 38021 FlyBaseID:FBgn0035101 Length:831 Species:Drosophila melanogaster
Sequence 2:XP_006235741.1 Gene:Cass4 / 296409 RGDID:1310643 Length:808 Species:Rattus norvegicus


Alignment Length:886 Identity:201/886 - (22%)
Similarity:318/886 - (35%) Gaps:260/886 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    69 GTLHRAKSAQKLYAKAIYDNYADTSDELPFKKGDILTVLEQDTEGFQGWWLCSLRNRQGLCPGNR 133
            ||..|..:.:.|.|:|:|||:.|.||||.|.:|||||::||:....:|||.|.|..||||.|.||
  Rat     3 GTGIREGATKTLLARALYDNHPDCSDELAFSRGDILTIVEQNVPESEGWWKCLLHGRQGLAPANR 67

  Fly   134 LRVLNS--YDSGC-----------------------FS-----------------PSPASSPV-- 154
            |:||..  .|..|                       ||                 ||||::.|  
  Rat    68 LQVLRETPVDRPCPLPPRGLDSDLTGSEAPCQVFNSFSPPTPGPVYEPMKSWVEGPSPATAQVYE 132

  Fly   155 ----PSLA-----------------------ASTATLDSSICSAEIYENGS-------------- 178
                ||.|                       ||..||.|.:....:....|              
  Rat   133 LPDSPSSARIICEKTLNFPKQALFVLPRPTRASLPTLPSQVYDVPVQRQVSSTLERPEKQQFYDI 197

  Fly   179 ------VISAVSSSNSNSGGAS--------SGLGSESVSRVSRRSW-HASPTKVITPQRHGDVYI 228
                  .:..:|:|.::..|.:        .|.|...:|...:..| |.:|..:      |...:
  Rat   198 PTSSQKAVFHISTSQASGPGVTLAPTTAFRQGGGYNPLSSPQKSDWIHDTPVSL------GKADV 256

  Fly   229 YNYS-------------PGSAT------------GSGARAAPSTPQQQIY--------------- 253
            .|.|             |||:.            |:..:...|.|::..|               
  Rat   257 RNASMTSFTKESCSNTIPGSSVVRIGAVTLSPQLGNAVQKKSSPPEETSYAFLTPRGDSLPSDAG 321

  Fly   254 SNQSIYQNFAMMSSPRQNASGSEFETYDIPKPATPVPLNYDSPRSGLPKASNSTTTSSSSLGTRF 318
            |:..:...|.:....|||...:   .||.||....|..|                ||.::.|.  
  Rat   322 SSYKVPSRFLIPRVERQNTKPN---IYDTPKAMQGVFQN----------------TSKATQGV-- 365

  Fly   319 ETLKSVAASIAEESYDVPRPLILGSNQLQQQMSQMTPSSSASSLLTSDSLSLSFSSSNRSSLANM 383
                |:|....|...:.|.    .|..:.:|.:.::|.|...|:.:|||.:...||.:..|..:.
  Rat   366 ----SLAGKELERGREAPE----NSPWVSRQTNFLSPDSDRLSVASSDSRASVVSSCSSLSTDSS 422

  Fly   384 PDYDIPRRNPLPVRRQQSGLTYDFPLPPLQEQVPRVLCTPSTVTTTKELPLELSSALETLAKLQL 448
            |.                                     .|:..:.|||.::|..|.||...||.
  Rat   423 PG-------------------------------------SSSEDSVKELWMDLDFAKETAVALQS 450

  Fly   449 QTTAAINRLLSFVVPNWRTRAQLEPAIMDLKLAALRLRTTLHDLAEFGEGALGNATRSEDRNLAL 513
            :..:::..||.||...||.:..||..:..::.||.|:..:|.:..:|.:|..|.|....|..|..
  Rat   451 RVASSVAGLLLFVSRTWRFKDSLETNVNRIRGAADRVEESLREFLDFAQGVGGLACNLTDSYLQA 515

  Fly   514 KLRPLVRALRDANKLIHDSSESLDAQGAWSIDQLARSDEKHGCRPPDALDQLMVCAQTLTEDVRS 578
            ::|..::.:..:.:.:.|:..:|| :..||::.|.....:...   |.|::.:..|:.:.|||:.
  Rat   516 RVRDQLQTISSSYQTLLDAKGTLD-RCNWSLEVLVVDKAQSSV---DDLERFVQVARVVPEDVKR 576

  Fly   579 TTSFIQGNASLLFKRQLTVGHNGGSGTGVLEGSRGSAEW----------LEDYDYVAFES---KD 630
            .||.:..|..||||:..               .||..:|          .|...:....|   |.
  Rat   577 FTSIVVANGKLLFKQNC---------------ERGEVDWRCERCIQPPQREAESHPERSSPFHKQ 626

  Fly   631 AAARKNEALREAIPADLKTQFDTVIRTAESSAMGAGSGSIPTTPTARTTPT-TPCKSPEMTDKDK 694
            .||..:..|.:....|:..|....::....:.|...|..  ......|:|| .|..||...:.::
  Rat   627 PAAEHSLELAKKSRGDVCGQKSPNLQKKGKNTMEGKSNE--NQDFCGTSPTPLPSPSPSGQNVER 689

  Fly   695 KLVRYYAQQISTH----MGNLMQAIDSFLETVEKNQPPKFFIAYGKFVVVSAHNLVTIGDNVYRN 755
            |:      ::|.|    .|.|.:||..|..::..:|||:.||...|..:.....||   |.:...
  Rat   690 KI------RLSEHSRLYFGALFKAIGVFASSLSNSQPPEVFITQSKLAITIGQKLV---DTLCSE 745

  Fly   756 ISKEALREKILRCTNALSDALKTCVLKSKKAAAHFPSGSAV 796
            ..:...|.:||..::.|...||...|.:|.|...:||.||:
  Rat   746 TQERDERNEILCGSSHLCGLLKDLALATKNAVIQYPSPSAL 786

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
p130CASNP_001097456.2 SH3_CAS 81..136 CDD:212778 31/54 (57%)
Serine_rich_CAS 434..596 CDD:211403 44/161 (27%)
DUF3513 612..817 CDD:288849 49/203 (24%)
Cass4XP_006235741.1 SH3_CASS4 14..70 CDD:212933 32/55 (58%)
Serine_rich 436..591 CDD:285975 43/158 (27%)
FAT-like_CAS_C 688..808 CDD:300863 30/108 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166337506
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1086228at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm63532
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR10654
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
87.910

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