DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pdk1 and Prkcq

DIOPT Version :10

Sequence 1:NP_728471.2 Gene:Pdk1 / 38017 FlyBaseID:FBgn0020386 Length:836 Species:Drosophila melanogaster
Sequence 2:NP_001263650.1 Gene:Prkcq / 85420 RGDID:620968 Length:707 Species:Rattus norvegicus


Alignment Length:370 Identity:102/370 - (27%)
Similarity:171/370 - (46%) Gaps:75/370 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   221 QQQQQEQSQQQQQLQNPAPRRSPNDFIFGRYIGEGSYSIVYLAVDIHSRREYAIKVCEKRLILRE 285
            |..:.|.:.|:..||   .:...:|||..:.:|:||:..|:||....:::.:|||..:|.::|.:
  Rat   358 QPPEPEVNLQRASLQ---LKLKIDDFILHKMLGKGSFGKVFLAEFKRTKQFFAIKALKKDVVLMD 419

  Fly   286 RKQDYIKREREVMHQMTNVPGFVNLSCTFQDQRSLYFVMTYARKGDMLPYINRVGSFDVACTRHY 350
            ...:....|:.|:......|...::.||||.:.:|:|||.|...||::.:|.....||::....|
  Rat   420 DDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLFFVMEYLNGGDLMYHIQSCHKFDLSRATFY 484

  Fly   351 AAELLLACEHMHRRNVVHRDLKPENILLDEDMHTLIADFGSAKVMTAHERALATEHCSEQRRSNS 415
            |||::|..:.:|.:.:|:||||.:|||||.|.|..|||||..|           |:.....::| 
  Rat   485 AAEIILGLQFLHSKGIVYRDLKLDNILLDRDGHIKIADFGMCK-----------ENMLGDAKTN- 537

  Fly   416 DEDDEDSDRLENEDEDFYDRDSEELDDGDDEQQQEEMDSPRHRQRRYNRHRKASFVGTAQYVSPE 480
                                                                 :|.||..|::||
  Rat   538 -----------------------------------------------------TFCGTPDYIAPE 549

  Fly   481 VLQNGPITPAADLWALGCIVYQMIAGLPPFRGSNDYVIFKEILDCAVDFPQGFDKDAEDLVRKLL 545
            :|.......:.|.|:.|.::|:|:.|..||.|.::..:|..|......:|:..:::|:||:.||.
  Rat   550 ILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEEELFHSIRMDNPFYPRWLEREAKDLLVKLF 614

  Fly   546 RVDPRDRLGAQDEFGYYESIRAHPFFAGIDWQTL-RQQTPPPIYP 589
            ..:|..|||.:.:      ||.||.|..|:|:.| |::..||..|
  Rat   615 VREPEKRLGVRGD------IRQHPLFREINWEELERKEIDPPFRP 653

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pdk1NP_728471.2 STKc_PDK1 244..571 CDD:270733 89/326 (27%)
PH_PDK1 658..764 CDD:241293
PrkcqNP_001263650.1 C1_nPKC_theta-like_rpt1 153..213 CDD:410384
C1_nPKC_theta-like_rpt2 232..281 CDD:410387
STKc_nPKC_theta 374..704 CDD:270770 97/351 (28%)
Blue background indicates that the domain is not in the aligned region.

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