DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Kr and odd

DIOPT Version :9

Sequence 1:NP_001261181.1 Gene:Kr / 38012 FlyBaseID:FBgn0001325 Length:502 Species:Drosophila melanogaster
Sequence 2:NP_722922.1 Gene:odd / 33583 FlyBaseID:FBgn0002985 Length:392 Species:Drosophila melanogaster


Alignment Length:342 Identity:95/342 - (27%)
Similarity:126/342 - (36%) Gaps:69/342 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 IKQEDVHLDRSMSLSPPMSANTSATS--AAAIYPAMGLQQAAAASAFGMLSPTQLLAANRQAA-- 81
            ||:|     |..||||.::...:.|.  ...::||  :.:.|.|:...|..........:|..  
  Fly    34 IKEE-----RETSLSPMLTPPHTPTEEPLRRVHPA--ISEEAVATQLHMRHMAHYQQQQQQQQQQ 91

  Fly    82 ------AFMAQLPMSTLANTLFPHNPAA----------LFGAW---AA---QQSLPPQGTHLHSP 124
                  ..|.|......|...:|..|.|          |...|   ||   ||....|..|.|..
  Fly    92 QQHRLWLQMQQQQQQHQAPQQYPVYPTASADPVAVHQQLMNHWIRNAAIYQQQQQQQQHPHHHHH 156

  Fly   125 PASPHSPLSTPLGSGKHPLNSPNSTPQHHEPAKKARKLSVKKEFQTEISMSVNDMYHTSGGPISP 189
            ...||.|         ||      .|.|..|....                    .|:....:..
  Fly   157 HGHPHHP---------HP------HPHHVRPYPAG--------------------LHSLHAAVMG 186

  Fly   190 PSSGSSPNSTHDGAGGNAGCVGVSKDPSR-DKSFTCKICSRSFGYKHVLQNHERTHTGEKPFECP 253
            ...|:.|.....||||.:|....:...|| .|.|.||.|:|.|...:.|..||||||.|:|:.|.
  Fly   187 RHFGAMPTLKLGGAGGASGVPSGATGSSRPKKQFICKYCNRQFTKSYNLLIHERTHTDERPYSCD 251

  Fly   254 ECHKRFTRDHHLKTHMRLHTGEKPYHCSHCDRQFVQVANLRRHLRVHTGERPYTCEICDGKFSDS 318
            .|.|.|.|..||:.|..:|:.:||:.||.|.:.|.|...|..|...|..|.|:.|.||...|:..
  Fly   252 ICGKAFRRQDHLRDHRYIHSKDKPFKCSDCGKGFCQSRTLAVHKVTHLEEGPHKCPICQRSFNQR 316

  Fly   319 NQLKSHMLVHNGEKPFE 335
            ..||||:..|:.:...|
  Fly   317 ANLKSHLQSHSEQSTKE 333

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
KrNP_001261181.1 C2H2 Zn finger 224..244 CDD:275368 9/19 (47%)
zf-H2C2_2 237..261 CDD:290200 13/23 (57%)
C2H2 Zn finger 252..272 CDD:275368 8/19 (42%)
zf-H2C2_2 264..289 CDD:290200 10/24 (42%)
C2H2 Zn finger 280..300 CDD:275368 7/19 (37%)
zf-H2C2_2 292..316 CDD:290200 8/23 (35%)
C2H2 Zn finger 308..328 CDD:275368 8/19 (42%)
zf-H2C2_2 321..345 CDD:290200 6/15 (40%)
C2H2 Zn finger 336..352 CDD:275368 95/342 (28%)
oddNP_722922.1 COG5048 <203..334 CDD:227381 50/131 (38%)
C2H2 Zn finger 222..242 CDD:275368 9/19 (47%)
zf-H2C2_2 234..259 CDD:290200 13/24 (54%)
C2H2 Zn finger 250..270 CDD:275368 8/19 (42%)
zf-H2C2_2 262..285 CDD:290200 9/22 (41%)
C2H2 Zn finger 278..298 CDD:275368 7/19 (37%)
zf-C2H2 304..326 CDD:278523 8/21 (38%)
C2H2 Zn finger 306..326 CDD:275368 8/19 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 54 1.000 Inparanoid score I1809
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.960

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