DRSC/TRiP Functional Genomics Resources

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Protein Alignment Kr and CG12236

DIOPT Version :9

Sequence 1:NP_001261181.1 Gene:Kr / 38012 FlyBaseID:FBgn0001325 Length:502 Species:Drosophila melanogaster
Sequence 2:NP_727050.1 Gene:CG12236 / 31523 FlyBaseID:FBgn0029822 Length:553 Species:Drosophila melanogaster


Alignment Length:205 Identity:48/205 - (23%)
Similarity:76/205 - (37%) Gaps:39/205 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   145 SPNSTPQHHEPAKKARKLSV---------------KKEFQ-----TEISMSVNDMYHTSGGPISP 189
            |..:|||..:.|..|...:|               ::::|     .||::.:..:..|:.|   .
  Fly   340 SDGATPQTSQDATTAAAQNVAQYSSEYEILTESEMEEKYQADADNAEIAIEMTRLLGTASG---T 401

  Fly   190 PSSGSSPNSTHDGAGGNAGCVGVSKDPSRDKSFT-CKICSRSFGYKHVLQNHERT-HTGEKPFEC 252
            |.:||. ....|..||:|     :..||...|.| .|..|::.|....|:....| ....|....
  Fly   402 PGAGSG-QVMEDSGGGSA-----TTGPSTTVSVTQVKSDSKASGTNAALKPGSVTVARSSKSGAT 460

  Fly   253 PECHKRFTRDHHLKTHMRLHTGEKPYHCSHCDRQFVQVANLRRHLRVHTGE---RPYTCEICDGK 314
            .......:.:..::     :||..|.:||.|.|....|..||||:.....|   :.:.|.||...
  Fly   461 ASAPPAGSDEESVQ-----YTGLAPLNCSFCGRPLKSVNALRRHIASRHSEIQGKEHECFICMKS 520

  Fly   315 FSDSNQLKSH 324
            |.....|.:|
  Fly   521 FKTKWSLSTH 530

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
KrNP_001261181.1 C2H2 Zn finger 224..244 CDD:275368 5/20 (25%)
zf-H2C2_2 237..261 CDD:290200 3/24 (13%)
C2H2 Zn finger 252..272 CDD:275368 0/19 (0%)
zf-H2C2_2 264..289 CDD:290200 7/24 (29%)
C2H2 Zn finger 280..300 CDD:275368 9/19 (47%)
zf-H2C2_2 292..316 CDD:290200 8/26 (31%)
C2H2 Zn finger 308..328 CDD:275368 6/17 (35%)
zf-H2C2_2 321..345 CDD:290200 2/4 (50%)
C2H2 Zn finger 336..352 CDD:275368
CG12236NP_727050.1 BTB 22..116 CDD:279045
BTB 33..116 CDD:197585
Herpes_capsid <376..467 CDD:283714 22/99 (22%)
C2H2 Zn finger 483..512 CDD:275371 10/28 (36%)
C2H2 Zn finger 514..535 CDD:275371 6/17 (35%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 54 1.000 Inparanoid score I1809
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.050

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