DRSC/TRiP Functional Genomics Resources

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Protein Alignment lov and nacc1

DIOPT Version :10

Sequence 1:NP_611994.3 Gene:lov / 38007 FlyBaseID:FBgn0266129 Length:1143 Species:Drosophila melanogaster
Sequence 2:NP_001184134.2 Gene:nacc1 / 733749 XenbaseID:XB-GENE-979467 Length:495 Species:Xenopus tropicalis


Alignment Length:606 Identity:123/606 - (20%)
Similarity:191/606 - (31%) Gaps:195/606 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   121 NHQNHILRAFDALLKTKTLVDVTLVCAETSIRAHKMVLSACSPFFQRVFAETPCKHPVIVLKDFR 185
            |..|.||...:.........||::|......:||:.||:|.|.:|:.:|..:  |:||:.|.   
 Frog    11 NFGNSILECLNEQRLQGLYCDVSVVVRGHQFKAHRAVLAASSSYFRDLFHSS--KNPVVELP--- 70

  Fly   186 GWV----VQAIVDFMYRGEISVPQQRLQTLIQAGESLQVRGLVESSVPEHTPTPAASPDDFGMLD 246
            |.|    .|.|:.|.|.|.:|:.......|:.....||::.::|..........:.|.|..|:  
 Frog    71 GSVQPQSFQQILSFCYTGRLSMNVGDQFLLMYTAGFLQIQEIMEKGTEFFLKVSSPSCDSQGL-- 133

  Fly   247 TSMLSSTFEDECPTMVRPSKGGKLLMPSARLFGNASSAIAALGLRRKREQESDRDLESDQELGGS 311
                   ..:|.|....||       |:|.:   |::|.||..|.              .....|
 Frog   134 -------HPEETPGSEPPS-------PAATV---AAAATAAAALA--------------SSSSSS 167

  Fly   312 SPMPRRKQARPRRRSGDVPHDFTLNKTDAESLQ-TVIKHELLERAERDQ----EEAPDQDNSQGE 371
            |..|:.|                ....::|::| |.:...|.|..:::.    .:.|......|.
 Frog   168 SRAPKVK----------------TESQESEAVQCTPVAKRLWEGGQKEAGGVGRKVPRFSQGGGA 216

  Fly   372 AEKISSSPAKTLVERAKEQKSMKEEG---SDQPRSLNENHHQLELDDEDDDDQDHEEEEEQDIEE 433
            |    ..||..:.....|:.|.....   ||.|.|    :|. |.|:|::..:|..||:.:.|..
 Frog   217 A----VGPAGQVAPAGSERTSPGTSSAYTSDSPGS----YHN-EEDEEEEVGEDGTEEQYRQICN 272

  Fly   434 LIHTTNELRRQAAAAAANAAAMSPNPSPCLSDG------PEDLCTTKKGKELIS----------- 481
            :....:.:.....|....|.     |.|..||.      .:||.|..  .||||           
 Frog   273 MYTMYSMMNVNQTAEKVEAL-----PDPVFSDSRNRVRVRQDLATLP--AELISQIGNRCHPKLY 330

  Fly   482 ---GPSSSADCESNNN---NSSKLQDNN-----------QRIMLSLKDIRQLNANPNPTAIHTPT 529
               .|:...:..:..|   ..::|.:.:           :|::.|..| |...||...|.|.:.|
 Frog   331 EEGDPAEKIELVTGTNVFITRAQLMNCHISAGTRHKVLLRRLLASFFD-RNTLANSCGTGIRSST 394

  Fly   530 SCSGGNNGLLTFPPPGLRP-----------------PGLPDSPPCHMEALEAQMHAAAAAAV--- 574
            :            .|..:|                 |...:|   .|.|:.|.|...|...|   
 Frog   395 N------------DPSRKPLDSRVLHAVKFYCQNFAPNFKES---EMNAIAADMCTNARRVVRKS 444

  Fly   575 --------AAAGSGEHPFHHMEHQMEMSLAAAAAAAAMHQREPRDPRDGRDHNAFASNLLGPMGM 631
                    .|.|.....|.:...:||..|..||....                            
 Frog   445 WIPKLKLLMAEGDAYTSFINDTGKMEPDLMGAATPVE---------------------------- 481

  Fly   632 PPFGGHNGGHPGNSGPGNGCP 652
                 |..|:.|.  ||.|.|
 Frog   482 -----HGAGYEGE--PGEGMP 495

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lovNP_611994.3 BTB_POZ_BAB-like 139..222 CDD:349624 26/86 (30%)
HTH_psq 791..834 CDD:283007
nacc1NP_001184134.2 BTB_POZ_BTBD14B_NAC1 3..125 CDD:349599 31/118 (26%)
BEN 366..444 CDD:214981 19/93 (20%)
Blue background indicates that the domain is not in the aligned region.

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