DRSC/TRiP Functional Genomics Resources

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Protein Alignment lov and rib

DIOPT Version :10

Sequence 1:NP_611994.3 Gene:lov / 38007 FlyBaseID:FBgn0266129 Length:1143 Species:Drosophila melanogaster
Sequence 2:NP_001261085.1 Gene:rib / 44855 FlyBaseID:FBgn0003254 Length:680 Species:Drosophila melanogaster


Alignment Length:799 Identity:172/799 - (21%)
Similarity:254/799 - (31%) Gaps:297/799 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   108 PSAP-------QDHYSLRWNNHQNHILRAFDALLKTKTLVDVTLVCAETSIRAHKMVLSACSPFF 165
            |:||       ...|.|||||||.::::...||.:..:.||.:||..:...:||::||:|.||:|
  Fly     4 PTAPVASSGEVGQTYCLRWNNHQTNLVQILHALHEVGSYVDCSLVVDDEQFQAHRVVLAANSPYF 68

  Fly   166 QRVFAETPCKHPVIVLKDFRGWVVQAIVDFMYRGEISVPQQRLQTLIQAGESLQVRGLVESSVP- 229
            |.:..:.|..|..|:|...:|:.:.|::.:||.||.:|.:.:...:::..:.|||:||.::.:. 
  Fly    69 QHILKDVPQDHCSIILPGVKGFEIAALLQYMYTGETTVTKSQEPEILRTAKELQVKGLYDNLMKF 133

  Fly   230 EH---TPT------------------------------PAAS---------PDDFGM-------- 244
            .|   |||                              |:|:         |..||.        
  Fly   134 NHASVTPTSSSGAGGAKPQNGSASNHSSSVISTSTHISPSAAISSSCSPPPPPQFGYQPGYSHYP 198

  Fly   245 ----LDTSMLSSTFEDECPTMVRP--------SKGGKL-LMPSARLFGNASSAIAALGLRRKREQ 296
                :..|.:.:......||...|        ..||:. |.|||          ||..|....|.
  Fly   199 QQQPMSASQIPAGEAPLTPTQATPHSAASGAGEAGGQWPLTPSA----------AAAMLNSVYES 253

  Fly   297 ESDRDLESDQELGGSSPMPRRKQARPRRRSGDVPHDFTLNKTDAESL----QTVIKHELLERAER 357
            .:|           .:|:.|:|                |:...:..|    .|.|...:|.:|..
  Fly   254 AAD-----------MNPLKRKK----------------LSAISSMLLSGNRDTPILRNVLAQANP 291

  Fly   358 DQEEAPDQDNSQGEAEKISSSPAKTLVERAKEQKSMKEEGSDQPRSL----NENHHQLELDDEDD 418
            .....|...|:.|  ||..:.|               .:.:..|..|    .|.:|.....|...
  Fly   292 ADSSQPGPMNANG--EKTPTHP---------------HQNTQLPAGLGVSGGERNHSFNGSDYGG 339

  Fly   419 D--------DQDHEEEEEQDIEELIHTTNELRRQAAAAAANAAAMSPNPSPCLSDGPEDLCTTKK 475
            |        |:..|||..|...:    ..|.:|......|:.                 :|..:.
  Fly   340 DKEPLSPYTDRSFEEETGQSGGK----KPEWKRYKQYTRADM-----------------MCAIQA 383

  Fly   476 GKELISGPSSSADCESNNNNSSKLQDNNQRIMLSLKDIRQLNANPNPTAIHTPTSCSGGNNGLLT 540
            .:|   |.|:..........|..|.|.          :|:||.                ..|..|
  Fly   384 VRE---GMSALQASRKYGLPSRTLYDK----------VRKLNI----------------TTGRGT 419

  Fly   541 FPPPGLRPPGLPDSPPCHMEALEAQMHAAAAAAVA---AAGSGEH------------PFHH---- 586
            ...|...|||        .|:.:...::|||||.|   ..|.|.|            |.||    
  Fly   420 HRTPKRSPPG--------AESSQGFSYSAAAAAAAHNYGHGHGHHSEVKRDQKVDHVPAHHGMPP 476

  Fly   587 ---------MEHQM-------------------EMSLAAAAAAAAMHQREPRDPRDGRDHNAFAS 623
                     ::|..                   .|:|||||.|||..........|.|      |
  Fly   477 TIPPSAAALLDHAFLQQALENRGGDMAGREALHAMALAAAAHAAANRLSSSPAEMDQR------S 535

  Fly   624 NLLGPMGMPPFGGHNGGHPGNSGPGNGCPGQAAHERLEESM---------NRLSKELGKEFGKEF 679
            |..|.....|.|.|   :|              ||  :|:|         |.:.:|..::..::.
  Fly   536 NGHGMRSPSPQGRH---YP--------------HE--QEAMDLEMEKHEQNIIKRERDQDEREDA 581

  Fly   680 GKEFGKEFGPASPMSLQGPFNAPDGPPHPPSPLPFPG-------MSSAMTLTPPHMFGLDSPLGL 737
            ..|...|......:||.    ..:.||.|.||.|...       .|||......|   :|.|.. 
  Fly   582 DDEEDHEQEHVEDLSLA----RKERPPSPYSPQPTEAGAGVIMHASSASANGKDH---VDYPSS- 638

  Fly   738 FPPGIDPGKLYNPLMEMSD 756
              |...|..|...|||..|
  Fly   639 --PQFVPIGLKRELMEGED 655

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lovNP_611994.3 BTB_POZ_BAB-like 139..222 CDD:349624 27/82 (33%)
HTH_psq 791..834 CDD:283007
ribNP_001261085.1 BTB_POZ_BAB-like 42..125 CDD:349624 27/82 (33%)
HTH_psq 373..417 CDD:283007 11/89 (12%)
Blue background indicates that the domain is not in the aligned region.

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