DRSC/TRiP Functional Genomics Resources

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Protein Alignment lov and lola

DIOPT Version :9

Sequence 1:NP_611994.3 Gene:lov / 38007 FlyBaseID:FBgn0266129 Length:1143 Species:Drosophila melanogaster
Sequence 2:NP_788308.3 Gene:lola / 44548 FlyBaseID:FBgn0283521 Length:970 Species:Drosophila melanogaster


Alignment Length:436 Identity:106/436 - (24%)
Similarity:182/436 - (41%) Gaps:117/436 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   115 YSLRWNNHQNHILRAFDALLKTKTLVDVTLVCAETSIRAHKMVLSACSPFFQRVFAETPCKHPVI 179
            :.|||||||:.::..||.||:.:||||.||......::|||:|||||||:|..:..|...|||:.
  Fly     7 FCLRWNNHQSTLISVFDTLLENETLVDCTLAAEGKFLKAHKVVLSACSPYFATLLQEQYDKHPIF 71

  Fly   180 VLKDFRGWVVQAIVDFMYRGEISVPQQRLQTLIQAGESLQVRGLVESSVPEHTPTPAASPDDFGM 244
            :|||.:...::|::|:|||||:::.|.:|..|::|.||||::||.::......   |..|:..|.
  Fly    72 ILKDVKYQELRAMMDYMYRGEVNISQDQLAALLKAAESLQIKGLSDNRTGGGV---APKPESSGH 133

  Fly   245 LDTSMLSSTFEDECPTMVRPSKGGKLLMPSARLFGNASSAIAALGLRRKREQESDRDLESDQELG 309
            .....||..:..|.....|.:.||.:                          ::..|:...:| |
  Fly   134 HRGGKLSGAYTLEQTKRARLATGGAM--------------------------DTSGDVSGSRE-G 171

  Fly   310 GSSPMPRRKQARPRRRSGDVPHDFTLNKTDAESLQTVIKHELL---------------------- 352
            .|||..||::.|.|....|. ||    .:::..||....::.:                      
  Fly   172 SSSPSRRRRKVRRRSMENDA-HD----NSNSSVLQAAASNQSILQQTGAGLAVSALVTTQLSSGP 231

  Fly   353 -----ERAERDQEEAP---DQDNSQGEAEKISSS--------PAKTLVERAKEQKSMKEEGSDQP 401
                 .:|...|::.|   .....:.|:.|::||        .|...|::|...:...:..||  
  Fly   232 AAGTSSQASSTQQQQPLTSTNVTKKTESAKLTSSTAAPASGASASAAVQQAHLHQQQAQTTSD-- 294

  Fly   402 RSLNENHHQ---------LELDDEDDDDQDHEEEEEQDIEELIHTTNELRRQAAAAAANAAAMSP 457
             ::|..:.|         ::.||||.|                        :.:|.....:|..|
  Fly   295 -AINTENVQAQSQGGAQGVQGDDEDID------------------------EGSAVGGPNSATGP 334

  Fly   458 NPSPCLSDGPEDLCTTKKGKELISGPSSSADCESNNNNSSKLQDNN 503
            ||:...:.........|:...::.        :|::|:..|::||:
  Fly   335 NPASASASAVHAGVVVKQLASVVD--------KSSSNHKHKIKDNS 372

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lovNP_611994.3 BTB 130..225 CDD:279045 45/94 (48%)
BTB 141..226 CDD:197585 38/84 (45%)
HTH_psq 791..834 CDD:283007
lolaNP_788308.3 BTB 22..117 CDD:279045 45/94 (48%)
BTB 33..117 CDD:197585 38/83 (46%)
C2H2 Zn finger 905..925 CDD:275368
C2H2 Zn finger 935..955 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 59 1.000 Domainoid score I10615
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000141
OrthoInspector 1 1.000 - - otm40394
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR23110
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
55.010

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