DRSC/TRiP Functional Genomics Resources

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Protein Alignment lov and CG6118

DIOPT Version :10

Sequence 1:NP_611994.3 Gene:lov / 38007 FlyBaseID:FBgn0266129 Length:1143 Species:Drosophila melanogaster
Sequence 2:NP_001097806.1 Gene:CG6118 / 41884 FlyBaseID:FBgn0038339 Length:967 Species:Drosophila melanogaster


Alignment Length:681 Identity:152/681 - (22%)
Similarity:246/681 - (36%) Gaps:201/681 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 HQKLIK---HRQSTKLSMTDFACQAAPVKQPLPLELPLPLSVQL---------QLLAKTPTSDHA 58
            ||:.:.   ||.|:  |.|..|.|.|..:|...:.....|..||         |.|.:.....|.
  Fly   271 HQQAMSQHPHRLSS--SSTPPALQHALQQQQQHMLQQHQLQQQLQHQQQQQHQQQLQQQQQQHHQ 333

  Fly    59 PMHSTPPTTP-PTPPPLPLNMSQSASAVTEAATPENSLPATPPS---EGALAVPSAPQDHYSLRW 119
            ..|...|.|| |:.||.........:...:||..:.......||   :.:.|.|:. .|.|.|.|
  Fly   334 LAHPHQPHTPRPSTPPTTAQQIHITATQHQAAQQQLHQQQQQPSHKQQQSYADPNT-IDQYLLSW 397

  Fly   120 NNHQNHILRAFDALLKTKTLVDVTLVCAETSIRAHKMVLSACSPFFQRVFAETPCKHPVIVLKDF 184
            ||...::.|.|.:|.|.:.:||||:.......:|||:|||.|||:||::|.|.|..||::::.|.
  Fly   398 NNFHGNMCRGFHSLQKDEKMVDVTIAAGGKIFKAHKLVLSVCSPYFQQIFLENPSSHPILLMADV 462

  Fly   185 RGWVVQAIVDFMYRGEISVPQQRLQTLIQAGESLQVRGLVESSVPEHTPTPAASPDD-------- 241
            ....:..::||||.|:::|..:.|...::..|:::::||......:...:..:||.:        
  Fly   463 EASHMAGLLDFMYSGQVNVKYEDLPVFLKVAEAMKIKGLHTEKNLDSDASDISSPHESDGTECRY 527

  Fly   242 ----------------FGMLDTSMLSS-----TFEDECPTMVRPSKGGKLLMPSARLFGNASSAI 285
                            :|...:|..||     ...:.|||.:  |.||.         ||.:.| 
  Fly   528 ERGTHSVNITSGHAAGYGGAPSSQQSSPSPSLNGPNRCPTPL--SSGGS---------GNPNYA- 580

  Fly   286 AALGLRR----------------KREQESDRDLESDQELGGSSPMPRRKQARPRRRSGDVPHDFT 334
               |.|.                .|...::....:...||||:.                    :
  Fly   581 ---GFREHIKSKATLAETFMKNLNRNNNNNNSSNNYNHLGGSNG--------------------S 622

  Fly   335 LNKTDAES-----LQT--------------------VIKH---EL-----LERAERDQEEAPDQ- 365
            ||.|:|:|     ||.                    ::.|   ||     |:..|||:..:.:| 
  Fly   623 LNLTEADSNSFAILQANSKKMLDSARKQHKYLAKRKILMHYNTELGGEKRLKEMERDRYPSAEQH 687

  Fly   366 ----DNSQGEAEKISSSPAKTLVE---------------RAKEQKSMKEEGSDQPRSLNENHHQL 411
                :|:...|:.....|..|.:.               |..|...:....::.....:.|::..
  Fly   688 DDALNNNHSHAQDNIMEPIITTIVPQTPPPSTHNNNFKIRLVESHHLTNNSNNNQNQSSNNNNSS 752

  Fly   412 ELDDEDDDDQDHEEEEEQDIEELIHTTNELRRQAAAAAANAAAMSPNP-------------SPCL 463
            .....:|.:.|   ||..::.::.:......|:|....|     :|.|             ||. 
  Fly   753 SSPQSNDCNND---EEALNLVQIPNANGSRNREATPTCA-----TPTPDIQLIKREVKTELSPA- 808

  Fly   464 SDGPEDLCTTKKGKELISGP-----------SSSADCE--SNNNNSSKLQDNNQRIMLSL---KD 512
                |:|.......:.::|.           :|..|.|  ||||||....|||..:.|:|   |.
  Fly   809 ----ENLSNNNGHDDEMAGAGFDRKYDDNNNNSGLDMETDSNNNNSKPGGDNNNGLALALGKHKL 869

  Fly   513 IRQLNAN---PNPTAIHTP----TSCSGGNN 536
            :..:|.|   .:|...|..    .:..||||
  Fly   870 LSAINRNIEQDHPDHEHQDQQDREADHGGNN 900

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lovNP_611994.3 BTB_POZ_BAB-like 139..222 CDD:349624 29/82 (35%)
HTH_psq 791..834 CDD:283007
CG6118NP_001097806.1 Myb_DNA-bind_4 20..97 CDD:463994
BTB_POZ_BAB-like 418..500 CDD:349624 29/81 (36%)
Blue background indicates that the domain is not in the aligned region.

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