DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment gol and Rnf103

DIOPT Version :9

Sequence 1:NP_001163300.1 Gene:gol / 38006 FlyBaseID:FBgn0004919 Length:601 Species:Drosophila melanogaster
Sequence 2:XP_006236715.1 Gene:Rnf103 / 84508 RGDID:620586 Length:688 Species:Rattus norvegicus


Alignment Length:88 Identity:26/88 - (29%)
Similarity:40/88 - (45%) Gaps:18/88 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   275 CSVTKKAIMKIPTKT-----GKFSDEKDLDSD----------C--CAICIEAYKPTDTIRILPCK 322
            ||...|.....|.:.     |..:.::|::.|          |  |.:|:|.::....:..|||.
  Rat   579 CSCANKCCQTSPCERKRRSYGSHNTKEDMEPDWLTWPAGTLHCTECVVCLENFENGCLLMGLPCG 643

  Fly   323 HEFHKNCIDPWLIEHR-TCPMCK 344
            |.||:|||..||...| .||:|:
  Rat   644 HVFHQNCIVMWLAGGRHCCPVCR 666

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
golNP_001163300.1 PA_GRAIL_like 73..217 CDD:239037
UPF0233 226..>258 CDD:299753
zf-RING_2 301..344 CDD:290367 19/55 (35%)
Rnf103XP_006236715.1 RING 623..666 CDD:238093 17/42 (40%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1487241at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

Return to query results.
Submit another query.