DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment gol and ATL4H

DIOPT Version :10

Sequence 1:NP_001163300.1 Gene:gol / 38006 FlyBaseID:FBgn0004919 Length:601 Species:Drosophila melanogaster
Sequence 2:NP_001329841.1 Gene:ATL4H / 6241286 AraportID:AT4G17905 Length:336 Species:Arabidopsis thaliana


Alignment Length:186 Identity:47/186 - (25%)
Similarity:75/186 - (40%) Gaps:57/186 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   288 KTGKFSDEK-----DLDSDCCAICIEAYKPTDTIRILP-CKHEFHKNCIDPWLIEHRTCPMCKLD 346
            |.|.|..:|     .::...|:||:..:...:::|:|| |.|.||..|||.||..|..||:|:..
plant   161 KIGFFKLKKHQNGFKINGTDCSICLGEFNEDESLRLLPKCNHTFHVVCIDRWLKSHSNCPLCRAK 225

  Fly   347 VL-----------------KFYGYVFLGSEE--------------SILEYQPDPPQGLALV---- 376
            ::                 :|...|  ||.|              ||..:.|.......:|    
plant   226 IIVPTTQQPEHHVVVMNLDRFTSNV--GSAEGNVVVDDHREEVSVSISSHHPSWFSAADIVLRIS 288

  Fly   377 ---EARDESADL-NRSRDFVVDFPRVFVLDSGCVVGAREMLFPCRIPERSQSSLSL 428
               |..:.:.|| |.:|:.:||..|.| ...|.|:|.:         .|::.||::
plant   289 RDGEEEEGNYDLENGNREKLVDLKRSF-SSGGLVLGTQ---------GRTRRSLNI 334

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
golNP_001163300.1 PA_GRAIL_like 73..217 CDD:239037
HRD1 <237..>347 CDD:227568 23/64 (36%)
RING-H2_RNF130-like 302..347 CDD:438330 19/45 (42%)
ATL4HNP_001329841.1 RING-H2_EL5-like 180..223 CDD:438124 18/42 (43%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.