DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment gol and znrf3

DIOPT Version :9

Sequence 1:NP_001163300.1 Gene:gol / 38006 FlyBaseID:FBgn0004919 Length:601 Species:Drosophila melanogaster
Sequence 2:NP_001295484.1 Gene:znrf3 / 556813 ZFINID:ZDB-GENE-070705-263 Length:866 Species:Danio rerio


Alignment Length:287 Identity:68/287 - (23%)
Similarity:124/287 - (43%) Gaps:80/287 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   119 DYACTPYIRG------TLGAPIPDKGETWIALVRRGRCTFEEKVKHVYQQNAAGVIIYNDKQVMQ 177
            ||  |.|..|      ..||.|..:||. :.:...|.|...:: :.:|:....||:        :
Zfish    47 DY--TTYTTGLQGRFSRAGATISAEGEI-VQMHPLGLCNNNDE-EDLYEYGWVGVV--------K 99

  Fly   178 LEK-------MQIKGKT-----RNIAAVITYQNIGQDLSLTLDKGYNVT-------ISIIEGRRG 223
            ||:       :.:.||.     |...|||...:...|   .:|:...|:       :..::|...
Zfish   100 LEQPELDPSCLTVLGKAKRAVQRGATAVIFDVSENPD---AIDQLNQVSEDPLKRPVVYVKGTDA 161

  Fly   224 VRTISSLNRTSV-------------------LFVSISFIVLMIISLVWLIFYYIQRFRYMQAKDQ 269
            |:.::.:|:..|                   :|::. |:|:.::.|:.||     :.:..|.:.|
Zfish   162 VKLMNIVNKQKVARARIQHRPPRPTEYFDMGIFLAF-FVVVSLVCLILLI-----KIKLKQRRSQ 220

  Fly   270 QSRNLCSVTKKAIMKIPTKTGKFSDEKDLDSDC-------------CAICIEAYKPTDTIRILPC 321
            .|.|..::  :|:.|:.|...|...:...::.|             ||||:|.|...:.:|::||
Zfish   221 SSMNRMAI--QALEKMETCKFKAKFKGQREASCGASDSVSSSSTSDCAICLEKYIDGEELRVIPC 283

  Fly   322 KHEFHKNCIDPWLIEHRTCPMCKLDVL 348
            .|.|||.|:||||::|.|||.|:.:::
Zfish   284 AHRFHKKCVDPWLLQHHTCPHCRHNII 310

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
golNP_001163300.1 PA_GRAIL_like 73..217 CDD:239037 26/122 (21%)
UPF0233 226..>258 CDD:299753 8/50 (16%)
zf-RING_2 301..344 CDD:290367 23/55 (42%)
znrf3NP_001295484.1 zf-RING_2 265..306 CDD:290367 22/40 (55%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 790..811
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1487241at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.920

Return to query results.
Submit another query.