DRSC/TRiP Functional Genomics Resources

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Protein Alignment gol and Srsf8

DIOPT Version :9

Sequence 1:NP_001163300.1 Gene:gol / 38006 FlyBaseID:FBgn0004919 Length:601 Species:Drosophila melanogaster
Sequence 2:XP_006257042.2 Gene:Srsf8 / 317533 RGDID:1563383 Length:783 Species:Rattus norvegicus


Alignment Length:72 Identity:30/72 - (41%)
Similarity:44/72 - (61%) Gaps:4/72 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly   277 VTKKAIMKIPTKTGKFSDEKDLDSDCCAICIEAYKPTDTIRILPCKHEFHKNCIDPWLIEHRTCP 341
            :||:.|..:|.||  |.:...|:.  |:|||..|.....||:|||.||:|..|||.||.::.|||
  Rat   707 LTKEQINTLPVKT--FCENDKLNH--CSICITPYTQNSKIRVLPCFHEYHDKCIDRWLSDNSTCP 767

  Fly   342 MCKLDVL 348
            :|:..::
  Rat   768 ICRKQII 774

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
golNP_001163300.1 PA_GRAIL_like 73..217 CDD:239037
UPF0233 226..>258 CDD:299753
zf-RING_2 301..344 CDD:290367 21/42 (50%)
Srsf8XP_006257042.2 RRM <26..175 CDD:223796
RRM_SF 28..100 CDD:302621
zf-RING_2 727..770 CDD:290367 21/44 (48%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1487241at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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