DRSC/TRiP Functional Genomics Resources

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Protein Alignment gsb and Pax4

DIOPT Version :10

Sequence 1:NP_523863.1 Gene:gsb / 38005 FlyBaseID:FBgn0001148 Length:427 Species:Drosophila melanogaster
Sequence 2:NP_113987.1 Gene:Pax4 / 83630 RGDID:620433 Length:349 Species:Rattus norvegicus


Alignment Length:340 Identity:131/340 - (38%)
Similarity:170/340 - (50%) Gaps:69/340 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 GQGRVNQLGGVFINGRPLPNHIRRQIVEMAAAGVRPCVISRQLRVSHGCVSKILNRFQETGSIRP 83
            |...||||||:|:||||||...|:|||::|..|:|||.|||.|:||:|||||||.|:..||.:.|
  Rat     5 GLSSVNQLGGLFVNGRPLPLDTRQQIVQLAIRGMRPCDISRSLKVSNGCVSKILGRYYRTGVLEP 69

  Fly    84 GVIGGSKPRVATPDIESRIEELKQSQPGIFSWEIRAKLIEAGVCDKQNAPSVSSISRLLRGSSGS 148
            ..|||||||:|||.:.:||.:||...|.:|:|||:.:|...|:|.:..|||||||:|:||.....
  Rat    70 KGIGGSKPRLATPAVVARIAQLKDEYPALFAWEIQRQLCAEGLCTQDKAPSVSSINRVLRALQED 134

  Fly   149 GTSH----SIDGILGGGAGSVGSEDESEDDAEPSVQLKRKQRRSRTTFSNDQIDALERIFARTQY 209
            ...|    ....:|.....|..|..|:.....|..     ..|:||.||..|.:|||:.|.|.||
  Rat   135 QRLHWTQLRSPAVLAPALPSPHSNCEAPRGPHPGT-----SHRNRTIFSPGQAEALEKEFQRGQY 194

  Fly   210 PDVYTREELAQSTGLTEARVQVWFSNRRARLRKQ-------------------------LNTQQV 249
            ||...|.:||.:|.|.|..|:||||||||:.|:|                         ::.||.
  Rat   195 PDSVVRGKLAAATSLPEDTVRVWFSNRRAKWRRQEKLKWETQMPGASQDLMVPKDSPGIISAQQS 259

  Fly   250 PSFAPTST---------SF-----GATP------TTSAA------------PAPNMGMSLYSSQS 282
            |...|::.         ||     ||.|      |||.|            |   :..|.|...:
  Rat   260 PGSVPSAALPVLEQLNPSFCQLCWGAVPDRCSSDTTSQACLQPYWECHSLLP---VASSSYMEFA 321

  Fly   283 WPSSGAYENHAAYGG 297
            ||....:..|...||
  Rat   322 WPCLTTHPVHHLIGG 336

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gsbNP_523863.1 PAX 19..143 CDD:128645 70/123 (57%)
Homeodomain 186..242 CDD:459649 30/55 (55%)
Pax4NP_113987.1 PAX 5..129 CDD:128645 70/123 (57%)
PAI subdomain. /evidence=ECO:0000255|PROSITE-ProRule:PRU00381 8..64 36/55 (65%)
RED subdomain. /evidence=ECO:0000255|PROSITE-ProRule:PRU00381 83..131 22/47 (47%)
Homeodomain 172..227 CDD:459649 30/54 (56%)
Transcription repression 278..349 16/62 (26%)

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