DRSC - DRSC Integrative Ortholog Prediction Tool

DRSC/TRiP Functional Genomics Resources

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Protein Alignment gsb and RLT2

DIOPT Version :10

Sequence 1:	NP_523863.1	Gene:	gsb / 38005	FlyBaseID:	FBgn0001148	Length:	427	Species:	Drosophila melanogaster
Sequence 2:	NP_199231.1	Gene:	RLT2 / 834441	AraportID:	AT5G44180	Length:	1694	Species:	Arabidopsis thaliana

Alignment Length:	39	Identity:	12/39 - (30%)
Similarity:	19/39 - (48%)	Gaps:	9/39 - (23%)

- Green bases have known domain annotations that are detailed below.

  Fly    10 VRAIFPGHPECCTIGY---HVRLHLKFPDKINSLHRRRH 45
            |.|:|...|  ..|||   ..::|:..|:    |.||::
plant   113 VGALFISIP--ALIGYLQEMSKIHIPEPE----LARRKY 145

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
gsb	NP_523863.1	PAX	19..143	CDD:128645	8/30 (27%)
gsb	NP_523863.1	Homeodomain	186..242	CDD:459649
RLT2	NP_199231.1	Homeodomain	18..74	CDD:459649
		DUF5401	<322..>457	CDD:375164
		DDT	515..570	CDD:460696
		HARE-HTH	696..765	CDD:461541
		WHIM1	899..941	CDD:464774
		WSD	1071..1145	CDD:464775
Blue background indicates that the domain is not in the aligned region.

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