DRSC/TRiP Functional Genomics Resources

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Protein Alignment gsb and HDG1

DIOPT Version :10

Sequence 1:NP_523863.1 Gene:gsb / 38005 FlyBaseID:FBgn0001148 Length:427 Species:Drosophila melanogaster
Sequence 2:NP_191674.1 Gene:HDG1 / 825287 AraportID:AT3G61150 Length:808 Species:Arabidopsis thaliana


Alignment Length:243 Identity:53/243 - (21%)
Similarity:81/243 - (33%) Gaps:78/243 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 FGGYPFQGQGRVNQLGGVFINGRPLPNHIRRQIVE--MAAAGVRPCVISRQLRVSHGCVSKIL-- 72
            |.|:...|.|     ....::..|..||.....|:  :.:|.:.|   |:.|..|...:|..|  
plant     3 FNGFLDDGAG-----ASKLLSDAPYNNHFSFSAVDTMLGSAAIAP---SQSLPFSSSGLSLGLQT 59

  Fly    73 -NRFQETGSIRPGVIGGSKPRVATPDIESRIEELKQSQPGIFSWEIRAKLIEAGVCDKQNAPSVS 136
             ......|.|....:.....|  ..|:|||.|                         ..||.:||
plant    60 NGEMSRNGEIMESNVSRKSSR--GEDVESRSE-------------------------SDNAEAVS 97

  Fly   137 SISRLLRGSSGSGTSHSIDGILGGGAGSVGSEDESEDDAEPSVQ-LKRKQRRSRTTFSNDQIDAL 200
            .                                   ||.:.|.: ||:|:|..|.|  ..||..|
plant    98 G-----------------------------------DDLDTSDRPLKKKKRYHRHT--PKQIQDL 125

  Fly   201 ERIFARTQYPDVYTREELAQSTGLTEARVQVWFSNRRARLRKQLNTQQ 248
            |.:|....:||...|.:|::...|...:|:.||.|||.:::.|:...:
plant   126 ESVFKECAHPDEKQRLDLSRRLNLDPRQVKFWFQNRRTQMKTQIERHE 173

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gsbNP_523863.1 PAX 19..143 CDD:128645 25/128 (20%)
Homeodomain 186..242 CDD:459649 19/55 (35%)
HDG1NP_191674.1 COG5576 69..185 CDD:227863 37/169 (22%)
Homeodomain 111..166 CDD:459649 20/56 (36%)
START_ArGLABRA2_like 314..537 CDD:176884
Blue background indicates that the domain is not in the aligned region.

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