DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment gsb and Pax8

DIOPT Version :9

Sequence 1:NP_523863.1 Gene:gsb / 38005 FlyBaseID:FBgn0001148 Length:427 Species:Drosophila melanogaster
Sequence 2:NP_112403.2 Gene:Pax8 / 81819 RGDID:620434 Length:457 Species:Rattus norvegicus


Alignment Length:491 Identity:156/491 - (31%)
Similarity:218/491 - (44%) Gaps:138/491 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 GQGRVNQLGGVFINGRPLPNHIRRQIVEMAAAGVRPCVISRQLRVSHGCVSKILNRFQETGSIRP 83
            |.|.:|||||.|:||||||..:|::||::|..|||||.||||||||||||||||.|:.|||||||
  Rat     9 GHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIRP 73

  Fly    84 GVIGGSKPRVATPDIESRIEELKQSQPGIFSWEIRAKLIEAGVCDKQNAPSVSSISRLLR----- 143
            ||||||||:||||.:..:|.:.|:..|.:|:||||.:|:..||||....||||||:|::|     
  Rat    74 GVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTKVQQ 138

  Fly   144 ---------------------------------GSSGSGTSHSIDGILG----GGAGSVGSEDES 171
                                             .|...|:::||:|:||    |.......:|..
  Rat   139 PFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTYSINGLLGIAQPGSDNKRKMDDSD 203

  Fly   172 ED------DAEPSVQLKRKQRRSRTTFSNDQIDALERIFARTQYPDVYTREELAQSTGLTEARVQ 230
            :|      |::.|....||..|: .||....::.||..|.|..||:.|...              
  Rat   204 QDSCRLSIDSQSSSSGPRKHLRT-DTFGQHHLEPLECPFERQHYPEAYASP-------------- 253

  Fly   231 VWFSNRRARLRKQLNTQQVPSFAPTSTSFGATPTTSAAPAPNMGMSLYSSQSWPSSGAYENHAAY 295
                   :..:.:.....:|....|.....||.|.|..|   :|.:|.:.|::|.  ..:.|:.|
  Rat   254 -------SHTKGEQGLYPLPLLNSTLDDGKATLTPSNTP---LGRNLSTHQTYPV--VADPHSPY 306

  Fly   296 GGSVASMSP-ASSTSGTSSAAHSPVQTQAQQPGTGS------------EFMTSTYG--------- 338
              ::...:| .||:|.|.|:..|......||.|:|.            ....|.||         
  Rat   307 --AIKQETPELSSSSSTPSSLSSSAFLDLQQVGSGGPAGASVPPFNAFSHAASVYGQFTGQALLS 369

  Fly   339 ----VGSSNATYPSAAYSMPQTPATSAEQLRSQFASAAASG------------SHHPSTWDSYNF 387
                ||.:...||      |..|.:.    :..:||:|.:|            ||.|  :.||:.
  Rat   370 GREMVGPTLPGYP------PHIPTSG----QGSYASSAIAGMVAGSEYSGNAYSHTP--YASYSE 422

  Fly   388 AGSFFPPASAAGNHISGYHHQVDQKSSMMTTAPTYP 423
            |.. ||.:|...   |.|::.       .||.|:.|
  Rat   423 AWR-FPNSSLLS---SPYYYS-------STTRPSAP 447

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gsbNP_523863.1 PAX 19..143 CDD:128645 79/123 (64%)
homeodomain 186..243 CDD:238039 10/56 (18%)
Pax8NP_112403.2 PAX 9..133 CDD:128645 79/123 (64%)
PAI subdomain. /evidence=ECO:0000255|PROSITE-ProRule:PRU00381 12..68 38/55 (69%)
RED subdomain. /evidence=ECO:0000255|PROSITE-ProRule:PRU00381 87..135 21/47 (45%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 159..226 14/66 (21%)
Pax2_C 344..455 CDD:289189 28/127 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0849
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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