DRSC/TRiP Functional Genomics Resources

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Protein Alignment gsb and phox2ba

DIOPT Version :10

Sequence 1:NP_523863.1 Gene:gsb / 38005 FlyBaseID:FBgn0001148 Length:427 Species:Drosophila melanogaster
Sequence 2:NP_001139175.1 Gene:phox2ba / 795258 ZFINID:ZDB-GENE-090313-51 Length:155 Species:Danio rerio


Alignment Length:119 Identity:56/119 - (47%)
Similarity:68/119 - (57%) Gaps:10/119 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly   176 EPSVQLKRKQRRSRTTFSNDQIDALERIFARTQYPDVYTREELAQSTGLTEARVQVWFSNRRARL 240
            |..||.:|||||.||.|::.|:.||||.||.|||||:||||||.|...||||||||||.||||:.
Zfish     4 ERGVQERRKQRRVRTIFTSAQLKALERAFAHTQYPDIYTREELVQEIQLTEARVQVWFQNRRAKF 68

  Fly   241 RKQ----------LNTQQVPSFAPTSTSFGATPTTSAAPAPNMGMSLYSSQSWP 284
            |||          ..|...||...:.|:....|.::....|.:|.....|:..|
Zfish    69 RKQERAASWNESSSKTHSSPSHDSSETASATDPDSTQPSLPLIGDQKQDSRDRP 122

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gsbNP_523863.1 PAX 19..143 CDD:128645
Homeodomain 186..242 CDD:459649 38/55 (69%)
phox2baNP_001139175.1 Homeodomain 14..70 CDD:459649 38/55 (69%)
Blue background indicates that the domain is not in the aligned region.

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