DRSC/TRiP Functional Genomics Resources

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Protein Alignment gsb and pax2b

DIOPT Version :9

Sequence 1:NP_523863.1 Gene:gsb / 38005 FlyBaseID:FBgn0001148 Length:427 Species:Drosophila melanogaster
Sequence 2:NP_571715.1 Gene:pax2b / 60638 ZFINID:ZDB-GENE-001030-4 Length:386 Species:Danio rerio


Alignment Length:467 Identity:155/467 - (33%)
Similarity:211/467 - (45%) Gaps:152/467 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 PFQG---QGRVNQLGGVFINGRPLPNHIRRQIVEMAAAGVRPCVISRQLRVSHGCVSKILNRFQE 77
            ||..   .|.||||||||:||||||:.:|::|||:|..|||||.||||||||||||||||.|:.|
Zfish     9 PFSAMHRHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYE 73

  Fly    78 TGSIRPGVIGGSKPRVATPDIESRIEELKQSQPGIFSWEIRAKLIEAGVCDKQNAPSVSSISRLL 142
            ||||:|||||||||:||||.:..:|.:.|:..|.:|:||||.:|:..|:||....||||||:|::
Zfish    74 TGSIKPGVIGGSKPKVATPKVVDKIADYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSINRII 138

  Fly   143 RGS-------SGSGT---------------------------SHSIDGILG-----------GGA 162
            |..       |..||                           |:||:||||           ...
Zfish   139 RTKVQQPFHPSPDGTSLSTPGHTIIPSTASPPVSSSSNDPVGSYSINGILGIPRSNGEKRKRDAD 203

  Fly   163 GSVGSEDESEDDAEPSVQLKRKQRRSRTTFSNDQIDALERIFARTQYPDVY-TREEL-------- 218
            ||.||...|  |::.||:..||..|: ..|:..|::||:|:|.|..:|||: |.|.:        
Zfish   204 GSEGSAQSS--DSQGSVESLRKHLRA-DAFTQQQLEALDRVFERPAFPDVFPTSEHIKPEQASEY 265

  Fly   219 ---AQSTGLTEARVQVWFSNRRARLRKQLNTQQVPSFAPTSTSFGATPTTSAAPAPNMGMSLYSS 280
               |.:|||.|.:                                  |:.|::.|.::|.|:  |
Zfish   266 SLPALNTGLDEVK----------------------------------PSLSSSAASDLGASV--S 294

  Fly   281 QSWPSSGAYENHAAYGGSVASMSPASSTSGTSSAAHSPVQTQAQQPGTGSEFMTSTYGVGSSNAT 345
            ||:|          .|..:|      :|:......|.|...|...|       |||.......:.
Zfish   295 QSYP----------VGRDMA------NTTLPGYPPHVPPTGQGSYP-------TSTLAGMVPGSE 336

  Fly   346 YPSAAYSMPQTPATSAEQLRSQFASAAASGSHHPSTWDSYNFAGSFFPPASAAGNHISGYHHQVD 410
            :....||.||                          :.:||.|..|..||..:    |.|::...
Zfish   337 FSGNPYSHPQ--------------------------YTTYNEAWRFSNPAILS----SPYYYSAS 371

  Fly   411 QKSSMMTTAPTY 422
            :.|:..|.|..|
Zfish   372 RGSAPPTAATAY 383

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gsbNP_523863.1 PAX 19..143 CDD:128645 79/126 (63%)
homeodomain 186..243 CDD:238039 18/68 (26%)
pax2bNP_571715.1 PAX 15..139 CDD:128645 79/123 (64%)
Pax2_C 290..384 CDD:289189 32/149 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0849
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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