DRSC/TRiP Functional Genomics Resources

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Protein Alignment gsb and pax5

DIOPT Version :10

Sequence 1:NP_523863.1 Gene:gsb / 38005 FlyBaseID:FBgn0001148 Length:427 Species:Drosophila melanogaster
Sequence 2:NP_571713.2 Gene:pax5 / 60636 ZFINID:ZDB-GENE-001030-2 Length:396 Species:Danio rerio


Alignment Length:409 Identity:150/409 - (36%)
Similarity:201/409 - (49%) Gaps:107/409 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 GQGRVNQLGGVFINGRPLPNHIRRQIVEMAAAGVRPCVISRQLRVSHGCVSKILNRFQETGSIRP 83
            |.|.||||||||:||||||:.:|::|||:|..|||||.||||||||||||||||.|:.|||||||
Zfish    16 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIRP 80

  Fly    84 GVIGGSKPRVATPDIESRIEELKQSQPGIFSWEIRAKLIEAGVCDKQNAPSVSSISRLLR----- 143
            ||||||||:||||.:..:|.:.|:..|.:|:||||.:|:...|||..:.||||||:|::|     
Zfish    81 GVIGGSKPKVATPKVVDKIADYKRQNPTMFAWEIRDRLLAERVCDNDSVPSVSSINRIIRTKVQQ 145

  Fly   144 --GSSG-----------------------SGTSHSIDGILGGGAGSVGSEDESEDDAEPSV---- 179
              |.||                       :|:|:||.||||..:.:..|:.:.:|..:.|.    
Zfish   146 PPGQSGAVSAHNLASTVAVTQVSAVTSDAAGSSYSISGILGISSPADASKRKRDDPLQDSPLANG 210

  Fly   180 ------QLKRKQRRSRTTFSNDQID------------ALERIFARTQYPDVYTREELAQSTGL-- 224
                  ...|||.|.. .|:..|::            .||.:           :..||..||.  
Zfish   211 HSHSGRDFLRKQMRGE-LFTPQQLETSDYSAMASLAGGLEEM-----------KNSLANQTGAEL 263

  Fly   225 --TEARVQVW--FSNRRARLRKQLNTQQVPSF----APTSTSFGATPT-TSAAPAPNMGMSLYS- 279
              |.|..|.:  .|.|      .|.:..:|.:    .||.....:||: |...|..:...|.|| 
Zfish   264 GSTVAGPQSYPLVSGR------DLASTTLPGYPPHVPPTGQGSYSTPSLTGMVPGGDFSGSPYSH 322

  Fly   280 ------SQSW----PSSGAYENHAAYGGSVASMSPASSTSGTSSAAHSPVQTQAQQPGTGSEFMT 334
                  ::||    ||...::..  ||..:.|...|||       ...|.||  .|| |||.:..
Zfish   323 PQYSTYNESWRFANPSLLVFQQE--YGSLLGSERAASS-------GLFPGQT--PQP-TGSPYYY 375

  Fly   335 S--TYGVGSSNATYPSAAY 351
            |  |.|.|:: ||..::||
Zfish   376 SAATRGAGTA-ATATASAY 393

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gsbNP_523863.1 PAX 19..143 CDD:128645 81/123 (66%)
Homeodomain 186..242 CDD:459649 14/73 (19%)
pax5NP_571713.2 None

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