DRSC/TRiP Functional Genomics Resources

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Protein Alignment gsb and alx1

DIOPT Version :10

Sequence 1:NP_523863.1 Gene:gsb / 38005 FlyBaseID:FBgn0001148 Length:427 Species:Drosophila melanogaster
Sequence 2:NP_001038539.1 Gene:alx1 / 565176 ZFINID:ZDB-GENE-050419-191 Length:320 Species:Danio rerio


Alignment Length:153 Identity:63/153 - (41%)
Similarity:81/153 - (52%) Gaps:15/153 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly   169 DESEDDAEPSVQLKRKQRRSRTTFSNDQIDALERIFARTQYPDVYTREELAQSTGLTEARVQVWF 233
            ||..:..:.:|. ..|:||.||||::.|::.||::|.:|.|||||.||:||..|.||||||||||
Zfish   105 DELGEKCDSNVS-SSKKRRHRTTFTSAQLEELEKVFQKTHYPDVYVREQLAMRTELTEARVQVWF 168

  Fly   234 SNRRARLRKQLNTQQVPSFAPTSTSFGATPTTSAAPAPNMGMSLYSSQSWPSSGAYENHAAYGGS 298
            .||||:.||:....|:..   ..:.|.||...|..|..: ..|..|:..|....|       |.|
Zfish   169 QNRRAKWRKRERYGQIQQ---AKSHFAATYDISMLPRTD-SYSQISNNLWTGPSA-------GSS 222

  Fly   299 VAS--MSP-ASSTSGTSSAAHSP 318
            |.|  |.| .|....||...|||
Zfish   223 VVSSCMIPRGSPPCVTSPYPHSP 245

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gsbNP_523863.1 PAX 19..143 CDD:128645
Homeodomain 186..242 CDD:459649 35/55 (64%)
alx1NP_001038539.1 Homeodomain 121..177 CDD:459649 35/55 (64%)
Transactivation domain. /evidence=ECO:0000250|UniProtKB:Q63087 180..320 22/77 (29%)
OAR 296..314 CDD:461067
OAR. /evidence=ECO:0000255|PROSITE-ProRule:PRU00138 300..313
Blue background indicates that the domain is not in the aligned region.

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