DRSC/TRiP Functional Genomics Resources

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Protein Alignment gsb and phox2bb

DIOPT Version :10

Sequence 1:NP_523863.1 Gene:gsb / 38005 FlyBaseID:FBgn0001148 Length:427 Species:Drosophila melanogaster
Sequence 2:NP_001014818.1 Gene:phox2bb / 544654 ZFINID:ZDB-GENE-050407-3 Length:284 Species:Danio rerio


Alignment Length:196 Identity:73/196 - (37%)
Similarity:93/196 - (47%) Gaps:26/196 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   182 KRKQRRSRTTFSNDQIDALERIFARTQYPDVYTREELAQSTGLTEARVQVWFSNRRARLRKQLNT 246
            ||||||.||||::.|:..|||:||.|.|||:|||||||....||||||||||.||||:.|||.. 
Zfish    95 KRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQER- 158

  Fly   247 QQVPSFAPTSTSFGATPTTSAAPAPNMGMSLYSSQSWPSSGAYENHAAYGGSVASMSPASSTSGT 311
                          |....:||.....|....|.:.........:..:.||...:.:|.|:..|.
Zfish   159 --------------AAAAAAAAAKNGTGKKSDSREEDSKEAKATDPDSTGGPGPNPNPTSNCGGP 209

  Fly   312 SSAAHSPVQTQAQQPGTG--SEFMTSTYGVGSSNATYPSAAY-SMPQTPATSAEQLRSQFASAAA 373
                 ||...|....|.|  .:..||..|:|   .|.|:..: |.|.|..:..:.|...|||..:
Zfish   210 -----SPTGGQVSATGNGPVEQVKTSVAGMG---PTAPTQGWASAPGTITSIPDSLGGPFASVLS 266

  Fly   374 S 374
            |
Zfish   267 S 267

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gsbNP_523863.1 PAX 19..143 CDD:128645
Homeodomain 186..242 CDD:459649 37/55 (67%)
phox2bbNP_001014818.1 Homeodomain 99..155 CDD:459649 37/55 (67%)
Blue background indicates that the domain is not in the aligned region.

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