DRSC/TRiP Functional Genomics Resources

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Protein Alignment gsb and PAX4

DIOPT Version :9

Sequence 1:NP_523863.1 Gene:gsb / 38005 FlyBaseID:FBgn0001148 Length:427 Species:Drosophila melanogaster
Sequence 2:NP_001353039.1 Gene:PAX4 / 5078 HGNCID:8618 Length:351 Species:Homo sapiens


Alignment Length:280 Identity:119/280 - (42%)
Similarity:157/280 - (56%) Gaps:25/280 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 GQGRVNQLGGVFINGRPLPNHIRRQIVEMAAAGVRPCVISRQLRVSHGCVSKILNRFQETGSIRP 83
            |...:|||||:|:||||||...|:|||.:|.:|:|||.|||.|:||:|||||||.|:..||.:.|
Human     5 GISSMNQLGGLFVNGRPLPLDTRQQIVRLAVSGMRPCDISRILKVSNGCVSKILGRYYRTGVLEP 69

  Fly    84 GVIGGSKPRVATPDIESRIEELKQSQPGIFSWEIRAKLIEAGVCDKQNAPSVSSISRLLRG-SSG 147
            ..|||||||:|||.:.:||.:||...|.:|:|||:.:|...|:|.:...||||||:|:||. ...
Human    70 KGIGGSKPRLATPPVVARIAQLKGECPALFAWEIQRQLCAEGLCTQDKTPSVSSINRVLRALQED 134

  Fly   148 SG---TSHSIDGILGGGAGSVGSEDESEDDAEPSVQLKRKQRRSRTTFSNDQIDALERIFARTQY 209
            .|   |......:|.....:..|..|:.....|..     ..|:||.||..|.:|||:.|.|.||
Human   135 QGLPCTRLRSPAVLAPAVLTPHSGSETPRGTHPGT-----GHRNRTIFSPSQAEALEKEFQRGQY 194

  Fly   210 PDVYTREELAQSTGLTEARVQVWFSNRRARLRKQLNTQ------------QVPSFAP----TSTS 258
            ||...|.:||.:|.|.|..|:||||||||:.|:|...:            .||..||    ...|
Human   195 PDSVARGKLATATSLPEDTVRVWFSNRRAKWRRQEKLKWEMQLPGASQGLTVPRVAPGIISAQQS 259

  Fly   259 FGATPTTSAAPAPNMGMSLY 278
            .|:.||.:......:|.|.|
Human   260 PGSVPTAALPALEPLGPSCY 279

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gsbNP_523863.1 PAX 19..143 CDD:128645 68/123 (55%)
homeodomain 186..243 CDD:238039 31/56 (55%)
PAX4NP_001353039.1 PAX 5..129 CDD:128645 68/123 (55%)
Homeobox 174..226 CDD:306543 29/51 (57%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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